Basic Information

Insect: Cryptocephalus primarius
Gene Symbol: -
Assembly: GCA_963576515.1
Location: OY754956.1:3760864-3764587[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 1.4e-06 8.2e-05 23.0 0.2 1 23 52 74 52 74 0.98

2 17 0.0002 0.012 16.3 0.6 1 23 80 102 80 102 0.95

3 17 5.9e-06 0.00034 21.1 0.1 1 23 108 130 108 130 0.98

4 17 2.1e-05 0.0012 19.3 0.6 1 21 136 156 136 157 0.95

5 17 9.9e-07 5.7e-05 23.5 1.5 1 23 164 186 164 186 0.97

6 17 3.1e-05 0.0018 18.8 1.6 1 20 192 211 192 214 0.94

7 17 4.1e-05 0.0024 18.4 6.0 1 23 220 242 220 242 0.97

8 17 1.5e-06 8.8e-05 22.9 0.7 1 23 248 270 248 270 0.98

9 17 5.2e-05 0.003 18.1 1.0 1 23 276 298 276 298 0.98

10 17 0.00015 0.0086 16.7 4.8 1 23 304 326 304 326 0.97

11 17 1.4e-05 0.00084 19.9 2.4 2 23 347 368 346 368 0.97

12 17 1.4e-05 0.00082 19.9 0.5 1 23 374 396 374 396 0.99

13 17 1.4e-08 8.1e-07 29.3 0.5 1 23 402 424 402 424 0.99

14 17 8.9e-07 5.1e-05 23.7 0.4 1 23 430 452 430 452 0.97

15 17 3.5e-08 2e-06 28.1 0.8 1 23 458 480 458 480 0.99

16 17 1.5e-06 8.6e-05 23.0 3.6 1 23 486 508 486 508 0.97

17 17 1.1e-06 6.2e-05 23.4 1.5 1 23 514 536 514 536 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	1.4e-06	8.2e-05	23.0	0.2	1	23	52	74	52	74	0.98
2	17	0.0002	0.012	16.3	0.6	1	23	80	102	80	102	0.95
3	17	5.9e-06	0.00034	21.1	0.1	1	23	108	130	108	130	0.98
4	17	2.1e-05	0.0012	19.3	0.6	1	21	136	156	136	157	0.95
5	17	9.9e-07	5.7e-05	23.5	1.5	1	23	164	186	164	186	0.97
6	17	3.1e-05	0.0018	18.8	1.6	1	20	192	211	192	214	0.94
7	17	4.1e-05	0.0024	18.4	6.0	1	23	220	242	220	242	0.97
8	17	1.5e-06	8.8e-05	22.9	0.7	1	23	248	270	248	270	0.98
9	17	5.2e-05	0.003	18.1	1.0	1	23	276	298	276	298	0.98
10	17	0.00015	0.0086	16.7	4.8	1	23	304	326	304	326	0.97
11	17	1.4e-05	0.00084	19.9	2.4	2	23	347	368	346	368	0.97
12	17	1.4e-05	0.00082	19.9	0.5	1	23	374	396	374	396	0.99
13	17	1.4e-08	8.1e-07	29.3	0.5	1	23	402	424	402	424	0.99
14	17	8.9e-07	5.1e-05	23.7	0.4	1	23	430	452	430	452	0.97
15	17	3.5e-08	2e-06	28.1	0.8	1	23	458	480	458	480	0.99
16	17	1.5e-06	8.6e-05	23.0	3.6	1	23	486	508	486	508	0.97
17	17	1.1e-06	6.2e-05	23.4	1.5	1	23	514	536	514	536	0.98

Sequence Information

Coding Sequence: ATGAGCGACATTGAAGCGAccacttgcgattggtgcttaaAAGAAGCACCGGCGCAGGAGATCGAGGAGAAGCTATGGCGCCTCTGGAAAGtaatcagcgcagagCCTAGTAACGTGACGAGACCTTCACGGAGGTATACAAGAgtaaagccttttaaatgccCGACGTGTAATAAGGCCCTTACCACATCGGGCGCTTTGAAGATCCACATGCGTGCGCACACCGGCGGAAAACGGTTCAAGTGCTCCCTCTGCGATAAAGCCTTCACCGAGGGGAGCAGATTGAGGAAACACCAAGTCGCTCATACCGACGAGAGGCCTTTCGAATGCAAGATCTGTAACTTTGCCTTCGCTCGCCCGGGAGGCCTAAGGCTGCACATGCTCGTtcatacgggcgagaagccgtTTAAGTGTCCGTATTGCGATAGGGCTTTCCCTAGGGAGTACAGCTTCAGTAAACACGTGCAGAGACGTGCGTGCGAGAAGTCTTTTAAGTGTTCGCATTGCGACGAGGTTTTCGCTCGGCCTGGCGATTTGAAACGGCACACGTACTCTCATACGGGcgaaaaacctttcaaatgttccTCTTGTGATAAGACTTTTCGTAGGTCGGACAGTTTGAGAATGCACAAGTGGATCCATGCCGATgagaagccttttaagtgttcgcTCTGCACCAAGTCCTTCGCTTATTCCACCAGTTTGAAGAGGCACATGTGCTTTCATACAGGTGAGAGGCCCTTTAAGTGTCCCTCTTGTGATAAGACTTTTTCTCTGGCGGAAAATATGCGAAGACACCTACGGGGACATGCGGGCGAAAAGCGCTTTAAGTGTTCCATTTGCGACAAGAATTATACCACGTTTGGTATATTGAAGAGGCACATGCTCGTCCATACGGGGGAAAGGCCTTTCAAATGTTCCGTTTGTGATAAGACTTTTCCTAGATCGTGCAGATTGAAAAAACACAAGTTACTCCATGCCGAGACCGTCGCCGGTTCGAAGAGACACAAGTCAGTCCGTGCCGATGAGAAGCCTTCTAAGTGTTCACTCTGCACCAAGACCTTCGTTTATTCCATCAGTTTGAAGAGACACATGCGCtttcatacaggtgagaagccCTTTAAGTGTCCCTCTTGTGATAAGGCTTTTCCTTGGCGGATTAATCTGCAAAGGCACTTACGGAAGCACACGGGCGAAAGGCCCTTTAAGTGTTCCATTTGCGACAAGACTTTCACCATGCCTGATGGTCTAAGGTGGCACATGCGCACTCATACAGGGAAAAGACCCTTCGAATGTTCGGTTTGTAATAAGACGTTTATTACGCCGAGCAGTTTGAAGATACACAAGTTGATCCATGCCGATGAGAAGCCCTTTAAGTGTTCCATTTGCGACAAGACTTTCGCCATGTCTTATGGTTTAAAGGCGCACATGCGCACTCATACAGGGGAAAGACCCTTCGAATGTTCggtttgtaataagacttttactagGGCGAAccatttgaagagacacaagtCAGTCCATGCCGATgagaagccttttaagtgttcgcTCTGTACCGAGACCTTCACTCGTTCGAACGCTTTGAAGCAGCACATGCGCGCtcatacgggcgagaagccctATAAGCAGGGAGCGAAGAAAGATCCGGGAGTCCCGTTAGGAGAAGGGGACTCGAGGCACGTCTCCCATAAGGACAAGTACGGATCGCTGCTGGTCGATATGCGAGGAGAAGTCGTCGGAGGGCGCAAAAAGTaa
Protein Sequence: MSDIEATTCDWCLKEAPAQEIEEKLWRLWKVISAEPSNVTRPSRRYTRVKPFKCPTCNKALTTSGALKIHMRAHTGGKRFKCSLCDKAFTEGSRLRKHQVAHTDERPFECKICNFAFARPGGLRLHMLVHTGEKPFKCPYCDRAFPREYSFSKHVQRRACEKSFKCSHCDEVFARPGDLKRHTYSHTGEKPFKCSSCDKTFRRSDSLRMHKWIHADEKPFKCSLCTKSFAYSTSLKRHMCFHTGERPFKCPSCDKTFSLAENMRRHLRGHAGEKRFKCSICDKNYTTFGILKRHMLVHTGERPFKCSVCDKTFPRSCRLKKHKLLHAETVAGSKRHKSVRADEKPSKCSLCTKTFVYSISLKRHMRFHTGEKPFKCPSCDKAFPWRINLQRHLRKHTGERPFKCSICDKTFTMPDGLRWHMRTHTGKRPFECSVCNKTFITPSSLKIHKLIHADEKPFKCSICDKTFAMSYGLKAHMRTHTGERPFECSVCNKTFTRANHLKRHKSVHADEKPFKCSLCTETFTRSNALKQHMRAHTGEKPYKQGAKKDPGVPLGEGDSRHVSHKDKYGSLLVDMRGEVVGGRKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00393264;
90% Identity: iTF_00393264;
80% Identity: iTF_00393264;