Cpri018993.1
Basic Information
- Insect
- Cryptocephalus primarius
- Gene Symbol
- -
- Assembly
- GCA_963576515.1
- Location
- OY754956.1:5977026-5978279[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.0011 0.68 10.3 0.2 15 49 108 143 102 147 0.82 2 8 0.19 1.1e+02 3.2 0.1 23 46 145 168 142 176 0.88 3 8 0.0015 0.88 9.9 0.1 22 46 180 204 170 211 0.88 4 8 0.032 19 5.6 0.2 20 49 231 263 224 266 0.79 5 8 0.00063 0.38 11.1 0.1 21 46 263 288 259 294 0.91 6 8 0.14 86 3.6 0.0 22 51 292 321 287 323 0.86 7 8 0.057 34 4.8 0.1 22 52 320 350 315 351 0.85 8 8 0.5 3e+02 1.8 0.1 22 45 348 371 344 374 0.88
Sequence Information
- Coding Sequence
- ATGAGCGATGTGAAAGcgactacttgcgattggtgcttgagGGAAGCACCGGTGCAACCCATCGAGGAgaagttatggcgcttctgggTAGTAATCAGCAATGAAGATCCGCTCACAGAGTCCCTAAGCAACATTTGTGGGAATTGTAGGTGGCGCTGTAAGGAATTTTCCATGCGTACGGACAGGTGGAAGAGCAACGACGCCGTAATAGAGGTCCTCGCCTCGAGGAAGGTCGAAGGGGAATTTTCGGTCAACTTCGAGTATCGTCCTGTAATTAAAGAAGAGGTATCGGATATCGTTGAGGAAGGAACAGACCTGGCGCCTCAAGACCGTTCAAATGCTCGTGACAAGCCGAATATATGCTCGTTCTGCGATAAACCTTTCCGTAGCTCTTACCACTTGAACAGGCATCTGCCTATTCATACGGGCCGTAAACCCTTCAACTGTTCGCATTGTAATAAGGCTTTCGCCCAATCTGGCAACCTAATTACACATATGCGCATACATACAGTCAATCATCTGCGCACACATACCGGCAAGAAACCTTTTAAGTGCCCACATTGCGATAAGGCTTTCGCGCAGTCCACGAATTTAATGAATCACCTGCGAATACACACGAGCGAGACGCCTTTTCAATGCTTACAGTGCAACAAGACTTTTGCCGTGCTAGACGCTCTGAAGAGTCACTCGCAGGTTCATTCGAGCGATAAACCTTTTCAGTGCTCGCATTGCGTTAGGGCTTTTGCTCAGTCCAGCGGTTTGATCAATCACCTGCGCATacatacgggcgagaagcctttcAAGTGTCCACATTGCGCCAAGGCTTTCGCCCAGTCCAATAATTTAATCACCCATCTGCGCATACATACGGGCGAGATGCCTTTTAAGTGTCTACAATGCGACAAGGCCTTCGCCCAGTCGAACTCTCTGCAGACGCACCTGCGTGTTCATTCCGGTGATAAACCGTTTAAGTGTTCGTACTGTTCCAAGGCTTTCATTCAGTCGAACACTTTGAAGGTTCACTTGCGTATCCACACGGGTGAGAAGCCTTATGAATGTTCAAAGTGTGACAAGAGGTTCGTAGTGTCTAGTCACTTGAAGAGGCATTTACGCACACACACAGGTGACGCAAAGTTATAG
- Protein Sequence
- MSDVKATTCDWCLREAPVQPIEEKLWRFWVVISNEDPLTESLSNICGNCRWRCKEFSMRTDRWKSNDAVIEVLASRKVEGEFSVNFEYRPVIKEEVSDIVEEGTDLAPQDRSNARDKPNICSFCDKPFRSSYHLNRHLPIHTGRKPFNCSHCNKAFAQSGNLITHMRIHTVNHLRTHTGKKPFKCPHCDKAFAQSTNLMNHLRIHTSETPFQCLQCNKTFAVLDALKSHSQVHSSDKPFQCSHCVRAFAQSSGLINHLRIHTGEKPFKCPHCAKAFAQSNNLITHLRIHTGEMPFKCLQCDKAFAQSNSLQTHLRVHSGDKPFKCSYCSKAFIQSNTLKVHLRIHTGEKPYECSKCDKRFVVSSHLKRHLRTHTGDAKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00392964; iTF_00392896;
- 90% Identity
- iTF_00392964; iTF_00392896;
- 80% Identity
- iTF_00392964; iTF_00392896;