Cpri018993.1
Basic Information
- Insect
- Cryptocephalus primarius
- Gene Symbol
- -
- Assembly
- GCA_963576515.1
- Location
- OY754956.1:5977026-5978279[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.27 2.6e+02 1.9 0.3 13 35 115 134 109 145 0.74 2 9 0.0042 3.9 7.8 3.8 18 40 148 167 136 178 0.81 3 9 4.6e-05 0.043 14.0 0.7 15 40 181 203 172 207 0.84 4 9 0.35 3.2e+02 1.6 0.2 13 26 207 220 203 222 0.79 5 9 0.00016 0.14 12.3 0.4 5 40 228 259 224 262 0.81 6 9 0.00016 0.15 12.3 0.3 16 40 266 287 259 290 0.86 7 9 0.18 1.7e+02 2.5 0.1 18 40 296 315 292 318 0.82 8 9 0.051 47 4.3 2.0 17 40 323 343 313 346 0.84 9 9 0.019 18 5.7 2.9 13 41 347 372 338 373 0.82
Sequence Information
- Coding Sequence
- ATGAGCGATGTGAAAGcgactacttgcgattggtgcttgagGGAAGCACCGGTGCAACCCATCGAGGAgaagttatggcgcttctgggTAGTAATCAGCAATGAAGATCCGCTCACAGAGTCCCTAAGCAACATTTGTGGGAATTGTAGGTGGCGCTGTAAGGAATTTTCCATGCGTACGGACAGGTGGAAGAGCAACGACGCCGTAATAGAGGTCCTCGCCTCGAGGAAGGTCGAAGGGGAATTTTCGGTCAACTTCGAGTATCGTCCTGTAATTAAAGAAGAGGTATCGGATATCGTTGAGGAAGGAACAGACCTGGCGCCTCAAGACCGTTCAAATGCTCGTGACAAGCCGAATATATGCTCGTTCTGCGATAAACCTTTCCGTAGCTCTTACCACTTGAACAGGCATCTGCCTATTCATACGGGCCGTAAACCCTTCAACTGTTCGCATTGTAATAAGGCTTTCGCCCAATCTGGCAACCTAATTACACATATGCGCATACATACAGTCAATCATCTGCGCACACATACCGGCAAGAAACCTTTTAAGTGCCCACATTGCGATAAGGCTTTCGCGCAGTCCACGAATTTAATGAATCACCTGCGAATACACACGAGCGAGACGCCTTTTCAATGCTTACAGTGCAACAAGACTTTTGCCGTGCTAGACGCTCTGAAGAGTCACTCGCAGGTTCATTCGAGCGATAAACCTTTTCAGTGCTCGCATTGCGTTAGGGCTTTTGCTCAGTCCAGCGGTTTGATCAATCACCTGCGCATacatacgggcgagaagcctttcAAGTGTCCACATTGCGCCAAGGCTTTCGCCCAGTCCAATAATTTAATCACCCATCTGCGCATACATACGGGCGAGATGCCTTTTAAGTGTCTACAATGCGACAAGGCCTTCGCCCAGTCGAACTCTCTGCAGACGCACCTGCGTGTTCATTCCGGTGATAAACCGTTTAAGTGTTCGTACTGTTCCAAGGCTTTCATTCAGTCGAACACTTTGAAGGTTCACTTGCGTATCCACACGGGTGAGAAGCCTTATGAATGTTCAAAGTGTGACAAGAGGTTCGTAGTGTCTAGTCACTTGAAGAGGCATTTACGCACACACACAGGTGACGCAAAGTTATAG
- Protein Sequence
- MSDVKATTCDWCLREAPVQPIEEKLWRFWVVISNEDPLTESLSNICGNCRWRCKEFSMRTDRWKSNDAVIEVLASRKVEGEFSVNFEYRPVIKEEVSDIVEEGTDLAPQDRSNARDKPNICSFCDKPFRSSYHLNRHLPIHTGRKPFNCSHCNKAFAQSGNLITHMRIHTVNHLRTHTGKKPFKCPHCDKAFAQSTNLMNHLRIHTSETPFQCLQCNKTFAVLDALKSHSQVHSSDKPFQCSHCVRAFAQSSGLINHLRIHTGEKPFKCPHCAKAFAQSNNLITHLRIHTGEMPFKCLQCDKAFAQSNSLQTHLRVHSGDKPFKCSYCSKAFIQSNTLKVHLRIHTGEKPYECSKCDKRFVVSSHLKRHLRTHTGDAKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00393251;
- 90% Identity
- iTF_00393251;
- 80% Identity
- iTF_00393251;