Cpri018547.1
Basic Information
- Insect
- Cryptocephalus primarius
- Gene Symbol
- -
- Assembly
- GCA_963576515.1
- Location
- OY754956.1:4321719-4323251[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.39 2.4e+02 2.1 0.2 16 46 103 133 96 138 0.83 2 13 0.48 2.9e+02 1.9 0.0 26 44 141 159 136 164 0.88 3 13 2.4e-06 0.0015 18.8 0.0 21 52 164 195 161 196 0.89 4 13 0.66 4e+02 1.4 0.0 21 47 192 218 190 223 0.88 5 13 0.12 74 3.8 0.0 21 52 220 251 215 251 0.89 6 13 0.00065 0.39 11.1 0.0 22 46 249 273 245 279 0.90 7 13 0.082 49 4.3 0.2 24 48 279 303 273 307 0.82 8 13 0.048 29 5.1 0.0 21 45 304 328 300 334 0.90 9 13 0.004 2.4 8.5 0.0 22 45 333 356 326 360 0.87 10 13 0.084 51 4.3 0.0 22 51 361 390 356 393 0.84 11 13 0.63 3.8e+02 1.5 0.0 21 44 388 411 385 415 0.87 12 13 0.28 1.7e+02 2.6 0.1 21 44 416 439 409 447 0.84 13 13 7.4 4.5e+03 -1.9 0.0 22 46 445 469 441 473 0.82
Sequence Information
- Coding Sequence
- ATGGGCGAGACTTGCGATTGGTGCCTGCGAGAAGGGCCGGTGCGGAGGATCGAGGAGaggttatggcgcttctggagggtaatcagcgcagagGGACCCTTCGGGACACCTCCGAAGAACATCTGCGGGCAGTGTCAGTCACGGTACGAGGAGTTCTCGGTGTATGTCGAGATGTGCAAGGCCCACGCGTCCGTAGTGGAGAAGGTAGCGGCCGTGGGACACCTCAAAGACGAGCCTCGGATCGATACCGTGGAGCACCCGTCGACTGAGGAAGGAACTTCGATGGAAGACGGGGACGGGTCGAGTAAATCCGTATCCTTTTCCCGGTCGTCTTTTAAATGCTCGCACTGCGGCGAGGCTTATACGCGGTCGAACGACCTGAGGAACCACGTGCGCCTCCACACGGGCGAGGCCCTTTTCGAGTGTACCGTCTGTAGTAAGGCCTTCACCCAGTCCGGTAGTTTGAGGGCGCACGCGCACGTCCATACGGGCGAGAGGCCTTTCAGGTGTCCGATCTGCGATAAGGGTTTCACGCAGTCCGGCAATTTGCGAAAGCACGTCCGGCTGCATACCGGGGAGAAGCCGTTCAGGTGTTTCGTCTGCGATAAGAGTTTCGCCTGGTCCGGTAACATGCAAGCGCACGTGCGCCTCCATACCGGCGAGAGGCCGTTTAAGTGCTTCGTTTGTAACGGCACTTTCGTTCGGTCTGGTAGTTTGAAACATCACGTGTGCGTTCGTATGGAcgagaagccttttaagtgCTCCGTTTGCGGTAAGACTTTTACCCAGTCCGGTAACTTGCGGACGCACATGCGCGtccatacgggcgagaagcGTTTTAGGTGTTCCGTCTGTGATAAGTCCTTTACTCAGTCGTGTAGCTTGCGGACGCACATGCGCGTCCACACCGGCGAGAAACCCTTCAAGTGCTtcatttgtaataagactttcacTTGGTCGGGCAATTTGAAGATGCACATGCGCACTCACACAAACGAAAAGTCCTTCGATTGTCCCTTATGTAATAAGATTTTCGTTCGGTCCGGTaatttgaaaaagcacatgcgcGCTCATACGGTCGAGCAGTATTTCAAGTGCCCCGTctgtgataagacttttactctgTCGGGTAGTTTGAAgtcgcacatgcgcattcacacaggtgaaaagccttttaagtgcTCCGTCTGTGATAAGACCTTCGTTCGGTCCGGCGACGTGGGACGGCACATGCGCAGTCATACAGGCGAAAGGCCTTTTAAGTGTGCGACGTGCGATAAGACTTTCGCTCAGTCTAGTGCTTTGAAAATACACACGCTCATTCATACCGGCGAGAAGGCTTTTAAATGTTCGTCTTGCGATAAGGCCTTTAAGACGTCTTCTCATTTGAAGAGTCACATGCGCATTCATGCGCGAAAAGCCTCCCCTTCCTCGCCTGCGCATCAGACTTGA
- Protein Sequence
- MGETCDWCLREGPVRRIEERLWRFWRVISAEGPFGTPPKNICGQCQSRYEEFSVYVEMCKAHASVVEKVAAVGHLKDEPRIDTVEHPSTEEGTSMEDGDGSSKSVSFSRSSFKCSHCGEAYTRSNDLRNHVRLHTGEALFECTVCSKAFTQSGSLRAHAHVHTGERPFRCPICDKGFTQSGNLRKHVRLHTGEKPFRCFVCDKSFAWSGNMQAHVRLHTGERPFKCFVCNGTFVRSGSLKHHVCVRMDEKPFKCSVCGKTFTQSGNLRTHMRVHTGEKRFRCSVCDKSFTQSCSLRTHMRVHTGEKPFKCFICNKTFTWSGNLKMHMRTHTNEKSFDCPLCNKIFVRSGNLKKHMRAHTVEQYFKCPVCDKTFTLSGSLKSHMRIHTGEKPFKCSVCDKTFVRSGDVGRHMRSHTGERPFKCATCDKTFAQSSALKIHTLIHTGEKAFKCSSCDKAFKTSSHLKSHMRIHARKASPSSPAHQT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00392910;
- 90% Identity
- iTF_00392910;
- 80% Identity
- iTF_00392910;