Cpri018547.1
Basic Information
- Insect
- Cryptocephalus primarius
- Gene Symbol
- -
- Assembly
- GCA_963576515.1
- Location
- OY754956.1:4321719-4323251[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.00055 0.51 10.6 0.9 14 40 109 132 104 135 0.82 2 9 0.24 2.2e+02 2.1 0.9 6 38 130 160 127 164 0.72 3 9 0.21 2e+02 2.3 1.9 18 40 169 188 156 218 0.82 4 9 0.68 6.3e+02 0.7 0.9 17 36 224 240 210 247 0.73 5 9 0.00027 0.25 11.6 1.0 11 40 246 272 239 275 0.84 6 9 0.32 2.9e+02 1.7 2.3 14 40 277 300 272 303 0.78 7 9 0.0042 4 7.7 1.3 17 41 308 329 300 331 0.85 8 9 0.00016 0.15 12.3 2.1 5 40 325 356 322 359 0.84 9 9 0.014 13 6.1 1.7 2 40 350 384 350 386 0.84
Sequence Information
- Coding Sequence
- ATGGGCGAGACTTGCGATTGGTGCCTGCGAGAAGGGCCGGTGCGGAGGATCGAGGAGaggttatggcgcttctggagggtaatcagcgcagagGGACCCTTCGGGACACCTCCGAAGAACATCTGCGGGCAGTGTCAGTCACGGTACGAGGAGTTCTCGGTGTATGTCGAGATGTGCAAGGCCCACGCGTCCGTAGTGGAGAAGGTAGCGGCCGTGGGACACCTCAAAGACGAGCCTCGGATCGATACCGTGGAGCACCCGTCGACTGAGGAAGGAACTTCGATGGAAGACGGGGACGGGTCGAGTAAATCCGTATCCTTTTCCCGGTCGTCTTTTAAATGCTCGCACTGCGGCGAGGCTTATACGCGGTCGAACGACCTGAGGAACCACGTGCGCCTCCACACGGGCGAGGCCCTTTTCGAGTGTACCGTCTGTAGTAAGGCCTTCACCCAGTCCGGTAGTTTGAGGGCGCACGCGCACGTCCATACGGGCGAGAGGCCTTTCAGGTGTCCGATCTGCGATAAGGGTTTCACGCAGTCCGGCAATTTGCGAAAGCACGTCCGGCTGCATACCGGGGAGAAGCCGTTCAGGTGTTTCGTCTGCGATAAGAGTTTCGCCTGGTCCGGTAACATGCAAGCGCACGTGCGCCTCCATACCGGCGAGAGGCCGTTTAAGTGCTTCGTTTGTAACGGCACTTTCGTTCGGTCTGGTAGTTTGAAACATCACGTGTGCGTTCGTATGGAcgagaagccttttaagtgCTCCGTTTGCGGTAAGACTTTTACCCAGTCCGGTAACTTGCGGACGCACATGCGCGtccatacgggcgagaagcGTTTTAGGTGTTCCGTCTGTGATAAGTCCTTTACTCAGTCGTGTAGCTTGCGGACGCACATGCGCGTCCACACCGGCGAGAAACCCTTCAAGTGCTtcatttgtaataagactttcacTTGGTCGGGCAATTTGAAGATGCACATGCGCACTCACACAAACGAAAAGTCCTTCGATTGTCCCTTATGTAATAAGATTTTCGTTCGGTCCGGTaatttgaaaaagcacatgcgcGCTCATACGGTCGAGCAGTATTTCAAGTGCCCCGTctgtgataagacttttactctgTCGGGTAGTTTGAAgtcgcacatgcgcattcacacaggtgaaaagccttttaagtgcTCCGTCTGTGATAAGACCTTCGTTCGGTCCGGCGACGTGGGACGGCACATGCGCAGTCATACAGGCGAAAGGCCTTTTAAGTGTGCGACGTGCGATAAGACTTTCGCTCAGTCTAGTGCTTTGAAAATACACACGCTCATTCATACCGGCGAGAAGGCTTTTAAATGTTCGTCTTGCGATAAGGCCTTTAAGACGTCTTCTCATTTGAAGAGTCACATGCGCATTCATGCGCGAAAAGCCTCCCCTTCCTCGCCTGCGCATCAGACTTGA
- Protein Sequence
- MGETCDWCLREGPVRRIEERLWRFWRVISAEGPFGTPPKNICGQCQSRYEEFSVYVEMCKAHASVVEKVAAVGHLKDEPRIDTVEHPSTEEGTSMEDGDGSSKSVSFSRSSFKCSHCGEAYTRSNDLRNHVRLHTGEALFECTVCSKAFTQSGSLRAHAHVHTGERPFRCPICDKGFTQSGNLRKHVRLHTGEKPFRCFVCDKSFAWSGNMQAHVRLHTGERPFKCFVCNGTFVRSGSLKHHVCVRMDEKPFKCSVCGKTFTQSGNLRTHMRVHTGEKRFRCSVCDKSFTQSCSLRTHMRVHTGEKPFKCFICNKTFTWSGNLKMHMRTHTNEKSFDCPLCNKIFVRSGNLKKHMRAHTVEQYFKCPVCDKTFTLSGSLKSHMRIHTGEKPFKCSVCDKTFVRSGDVGRHMRSHTGERPFKCATCDKTFAQSSALKIHTLIHTGEKAFKCSSCDKAFKTSSHLKSHMRIHARKASPSSPAHQT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00392920; iTF_00393240;
- 90% Identity
- iTF_00392920; iTF_00393240;
- 80% Identity
- iTF_00392920; iTF_00393240;