Cpri018595.1
Basic Information
- Insect
- Cryptocephalus primarius
- Gene Symbol
- -
- Assembly
- GCA_963576515.1
- Location
- OY754956.1:4552451-4553675[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0039 2.4 8.6 0.6 20 44 131 155 115 159 0.74 2 9 0.00056 0.34 11.3 0.1 21 48 160 187 154 192 0.82 3 9 0.0091 5.5 7.4 0.1 22 47 189 214 186 220 0.89 4 9 0.063 38 4.7 0.0 22 46 217 241 214 248 0.84 5 9 0.013 7.7 6.9 0.0 21 51 248 278 243 279 0.87 6 9 0.25 1.5e+02 2.8 0.1 21 44 276 299 272 304 0.82 7 9 0.0011 0.65 10.4 0.0 21 48 304 331 301 335 0.86 8 9 0.0025 1.5 9.2 0.0 21 52 332 363 328 363 0.88 9 9 0.0021 1.3 9.4 0.0 21 45 360 384 358 387 0.90
Sequence Information
- Coding Sequence
- atGTGCGATGATACTCGAGGGGGTACCTGCGACTGGTGCCTGCGGGAGACGCCCGTGCAGACgatccaggagaggttatggcggttctggaaaataatcagcgcagagGATTCGATCAAGGGGACCCACAGGAATATCTGCGAGGAGTGTAAGTCACGCTTCGAGGAATTCTCGGTGTATATCGAAATGTGTAAAACCCATGCGGTTCTAGTAGAGAAGATACCGACCGTCGGGCATGTCGAGGAACATTCGGTCAACGCGGACCGTAATCCGGTAGTCGAGGAGGAAATTTCTATGGAAGATGAGTGCGGCACGTCACCTCGGTCAGCTTTTAAATGCGGTAAGGCTTATAGTCGGTCTAGCGGTTCGAAAAGGCATATGCGCAATCACACGGGCGAGGAACCTTTCACGTGCCCCATATGTAGTAAGGCTTTTGCCCGGGCTTGTTACTTAACGACGCACATGCGCGTTCATTCCGGCGAGAAGCCGTTCACTTGTCCCATCTGTGATAAAACATTCGCCCGGTCTTGCTATTTGACATCGCACATGCGCGTCCATACCGGCGACAAGCCCTTTAAGTGTCCCACCTGTGACAAGACTTTCGCCGAGTGCAGCACCTTGAGGAGGCACATGTGCCTTCACACGGGTGAAAAGTCATTCAAGTGTCCCAACTGTgacaaaacttttatttcgtCTAGTAACTTCAAGCGGCACGTGCGCGTTCATAACGGCGAGAGGCCTTCCGGGAAACCTCTCACGTGTACCGTCTGCGGTAAGGATTTTCTAGATTCCGGTAGCTTGAAGAGACACACGCGCCTCCACACGGGCGAAAAGCCGTTTCGGTGTCCGCTGTGCGGTAAGACTTTCGCTTGGTCCCATTGCTTGTCGTCGCACATGCTCGTCCACGCGGGCGAGAGGCCCTTCGGGTGTCCCGTGTGCGGTAAAACTTTTACTTCGTCGGGTAATCTGAAGCAGCACGTGCGCgtccacacgggcgagaagcccTTCAAGTGTCCCGTGTGTGATAAGGATTTTAATAAGTCCGACAGCGCGAagaggcacatgcgccttcacacgggggagaagccttttaagtgtCCGCTGTGCAATAAGGCTTTTACCGATTCTAGTAACTTGAAGGGTCACGTGCGCGTACACGCTGGTACTTAA
- Protein Sequence
- MCDDTRGGTCDWCLRETPVQTIQERLWRFWKIISAEDSIKGTHRNICEECKSRFEEFSVYIEMCKTHAVLVEKIPTVGHVEEHSVNADRNPVVEEEISMEDECGTSPRSAFKCGKAYSRSSGSKRHMRNHTGEEPFTCPICSKAFARACYLTTHMRVHSGEKPFTCPICDKTFARSCYLTSHMRVHTGDKPFKCPTCDKTFAECSTLRRHMCLHTGEKSFKCPNCDKTFISSSNFKRHVRVHNGERPSGKPLTCTVCGKDFLDSGSLKRHTRLHTGEKPFRCPLCGKTFAWSHCLSSHMLVHAGERPFGCPVCGKTFTSSGNLKQHVRVHTGEKPFKCPVCDKDFNKSDSAKRHMRLHTGEKPFKCPLCNKAFTDSSNLKGHVRVHAGT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00392906;
- 90% Identity
- iTF_00392906;
- 80% Identity
- iTF_00392906;