Cpri018595.1
Basic Information
- Insect
- Cryptocephalus primarius
- Gene Symbol
- -
- Assembly
- GCA_963576515.1
- Location
- OY754956.1:4552451-4553675[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0065 6.1 7.1 0.7 21 40 112 128 111 131 0.73 2 10 0.1 96 3.3 1.0 18 38 137 158 129 158 0.83 3 10 0.0091 8.5 6.7 1.9 16 38 163 186 153 190 0.84 4 10 0.17 1.5e+02 2.6 1.8 17 39 192 211 185 215 0.87 5 10 0.0046 4.3 7.6 0.6 14 40 217 240 212 243 0.86 6 10 0.91 8.5e+02 0.3 0.5 18 29 253 264 247 274 0.77 7 10 0.0013 1.2 9.4 2.1 5 39 269 299 265 306 0.82 8 10 0.0082 7.7 6.8 0.1 19 40 310 328 308 331 0.87 9 10 0.075 70 3.7 0.7 3 40 323 356 322 358 0.82 10 10 0.0008 0.74 10.1 0.2 3 40 351 384 349 386 0.85
Sequence Information
- Coding Sequence
- atGTGCGATGATACTCGAGGGGGTACCTGCGACTGGTGCCTGCGGGAGACGCCCGTGCAGACgatccaggagaggttatggcggttctggaaaataatcagcgcagagGATTCGATCAAGGGGACCCACAGGAATATCTGCGAGGAGTGTAAGTCACGCTTCGAGGAATTCTCGGTGTATATCGAAATGTGTAAAACCCATGCGGTTCTAGTAGAGAAGATACCGACCGTCGGGCATGTCGAGGAACATTCGGTCAACGCGGACCGTAATCCGGTAGTCGAGGAGGAAATTTCTATGGAAGATGAGTGCGGCACGTCACCTCGGTCAGCTTTTAAATGCGGTAAGGCTTATAGTCGGTCTAGCGGTTCGAAAAGGCATATGCGCAATCACACGGGCGAGGAACCTTTCACGTGCCCCATATGTAGTAAGGCTTTTGCCCGGGCTTGTTACTTAACGACGCACATGCGCGTTCATTCCGGCGAGAAGCCGTTCACTTGTCCCATCTGTGATAAAACATTCGCCCGGTCTTGCTATTTGACATCGCACATGCGCGTCCATACCGGCGACAAGCCCTTTAAGTGTCCCACCTGTGACAAGACTTTCGCCGAGTGCAGCACCTTGAGGAGGCACATGTGCCTTCACACGGGTGAAAAGTCATTCAAGTGTCCCAACTGTgacaaaacttttatttcgtCTAGTAACTTCAAGCGGCACGTGCGCGTTCATAACGGCGAGAGGCCTTCCGGGAAACCTCTCACGTGTACCGTCTGCGGTAAGGATTTTCTAGATTCCGGTAGCTTGAAGAGACACACGCGCCTCCACACGGGCGAAAAGCCGTTTCGGTGTCCGCTGTGCGGTAAGACTTTCGCTTGGTCCCATTGCTTGTCGTCGCACATGCTCGTCCACGCGGGCGAGAGGCCCTTCGGGTGTCCCGTGTGCGGTAAAACTTTTACTTCGTCGGGTAATCTGAAGCAGCACGTGCGCgtccacacgggcgagaagcccTTCAAGTGTCCCGTGTGTGATAAGGATTTTAATAAGTCCGACAGCGCGAagaggcacatgcgccttcacacgggggagaagccttttaagtgtCCGCTGTGCAATAAGGCTTTTACCGATTCTAGTAACTTGAAGGGTCACGTGCGCGTACACGCTGGTACTTAA
- Protein Sequence
- MCDDTRGGTCDWCLRETPVQTIQERLWRFWKIISAEDSIKGTHRNICEECKSRFEEFSVYIEMCKTHAVLVEKIPTVGHVEEHSVNADRNPVVEEEISMEDECGTSPRSAFKCGKAYSRSSGSKRHMRNHTGEEPFTCPICSKAFARACYLTTHMRVHSGEKPFTCPICDKTFARSCYLTSHMRVHTGDKPFKCPTCDKTFAECSTLRRHMCLHTGEKSFKCPNCDKTFISSSNFKRHVRVHNGERPSGKPLTCTVCGKDFLDSGSLKRHTRLHTGEKPFRCPLCGKTFAWSHCLSSHMLVHAGERPFGCPVCGKTFTSSGNLKQHVRVHTGEKPFKCPVCDKDFNKSDSAKRHMRLHTGEKPFKCPLCNKAFTDSSNLKGHVRVHAGT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00392944; iTF_00393239;
- 90% Identity
- iTF_00392944; iTF_00393239;
- 80% Identity
- iTF_00392944; iTF_00393239;