Cpri018665.1
Basic Information
- Insect
- Cryptocephalus primarius
- Gene Symbol
- -
- Assembly
- GCA_963576515.1
- Location
- OY754956.1:4859616-4861219[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 3.4e-05 0.021 15.1 0.1 23 47 138 163 129 170 0.82 2 11 0.0044 2.7 8.4 0.0 21 46 193 218 187 224 0.87 3 11 0.15 89 3.5 0.0 21 44 221 244 217 249 0.81 4 11 0.017 10 6.5 0.0 22 52 250 280 247 280 0.84 5 11 0.015 9.2 6.7 0.0 21 46 277 302 275 306 0.91 6 11 0.11 64 4.0 0.0 24 44 308 328 303 332 0.85 7 11 0.0037 2.3 8.6 0.0 21 45 333 357 330 361 0.89 8 11 0.045 27 5.2 0.1 18 48 358 387 356 397 0.90 9 11 0.0022 1.3 9.4 0.1 20 48 416 444 406 448 0.85 10 11 0.0038 2.3 8.6 0.0 21 52 445 476 440 476 0.88 11 11 0.014 8.4 6.8 0.1 21 48 473 499 471 503 0.90
Sequence Information
- Coding Sequence
- ATGGGGGGTGCTGAGGCGAGCACTTGCGACTGGTGCCTGCGGGAGACGCCGGTAGAAACGATCCAGGAGGAATTATGGCGGTTCTGGAAGATAATCAGCGCGGAGGTTCCCCTCCTGGAGTCCCGTAGGAACATCTGCGAGTCCTGTAAATCGCGGTACGAGGAATTCATGACGTACGTCGAGACGTGCAAAACCCACGCCTCCTTAGTCGAGAAGGCGCTGCTGCCCCCTGGACGAGTCGGGGACGGACCTTCGAACGATCACCTGTACCGCCCGTCGGTCAAGGAAGAGGTCCTGACGGGAGACGAGTCCGGTACGGCCTTCCCTCCGTCGCCCTTTAAATGTTCGTACTGCGGTAAGGCCTACGTACGGTCTAGTAGCTTGACGAAGCACGTGCGACTTCACACGGGCGAGCCGGCGCTCAAGTGTCCCGTCTGCGACAAGGCCTTCACCCAGTCGGGTAATTTGAAACGACACGTGCGCCTCCATGCCGTCGAGGCGCCTCTCAGGTGCTCCGTCTGCGGTAAGACTTGCGCTCGGTTCGGCCGTCTGATGACGCACATGCGCGTCCACACGGGCGAACGGCCCTTCGAATGTACCGTCTGCGGTAAGGCGTTTACCCAATCCGGTAATTTGAAGACGCACATGCGGACtcatacgggcgagaagccgtTTAGATGTCCCGTCTGTGACGATAGCTTTGCTTTGTCGGACCACTTGAAGGTGCACGTGATGATTCATGCGGGCGAGAAGTCTTTCAAGTGCGTCGTCTGCGATAAGGCCTTCACGCAATCCGGTAATTTGAAAATGCACGTGCGGCTTCATACCGGCGAGAAGCCTTTCAGCTGTACCGTGTGCGATAAGACCTTCACACGGTCCGGtaatttgaaaacgcacatgctgCTCCATACGGGCGAGAGGCGCTTCAAGTGCCCCGTCTGCGGTAAGGCTTTCGCGCAGTCCGACGGTTTGAAAATGCACATGTGCgtccacacgggcgagaagccttACAAGTGTCCCGTGTGTGATAAGACCTTCGCTTGGTCCGGCAATTTGAAAAACCACATGCGCCGTCATACGGGGGAAAAGCCTTTCAAGTGCACCGTCTGCGGTAAGACTTGTACTCGGTCCGACGTTTTGAAGAAGCACGTGCTTCGCCACACGGGCGAGAAGGCCTTTAAGTGTACCGTATGCGGTAAGGCTTTTGCGCTGTCTGACGGCTTGAAGATGCACATGAGCgtccacacgggcgagaagccttGCAAGTGTACCTTCTGCGGTAAGGCCTTCACTTGTTCGAGTAATCTAAGAAAGCACGTACGGGtccatacgggcgagaagccctTCGAGTGCCCCGTCTGTGGCAAAGGTTTTAACGAATCAGCCGCCTTGAAacagcacatgcgccttcacaccggcgagaagccttttaaatgccCCACCTGTGGTACGGCCTTTACCCGGTCCGGCTGTTTGAAGAAGCACGTGCTTCGTCATACAGGCGAAGAGCCTCTTTAA
- Protein Sequence
- MGGAEASTCDWCLRETPVETIQEELWRFWKIISAEVPLLESRRNICESCKSRYEEFMTYVETCKTHASLVEKALLPPGRVGDGPSNDHLYRPSVKEEVLTGDESGTAFPPSPFKCSYCGKAYVRSSSLTKHVRLHTGEPALKCPVCDKAFTQSGNLKRHVRLHAVEAPLRCSVCGKTCARFGRLMTHMRVHTGERPFECTVCGKAFTQSGNLKTHMRTHTGEKPFRCPVCDDSFALSDHLKVHVMIHAGEKSFKCVVCDKAFTQSGNLKMHVRLHTGEKPFSCTVCDKTFTRSGNLKTHMLLHTGERRFKCPVCGKAFAQSDGLKMHMCVHTGEKPYKCPVCDKTFAWSGNLKNHMRRHTGEKPFKCTVCGKTCTRSDVLKKHVLRHTGEKAFKCTVCGKAFALSDGLKMHMSVHTGEKPCKCTFCGKAFTCSSNLRKHVRVHTGEKPFECPVCGKGFNESAALKQHMRLHTGEKPFKCPTCGTAFTRSGCLKKHVLRHTGEEPL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00392902;
- 90% Identity
- iTF_00392902;
- 80% Identity
- iTF_00392902;