Cmor015021.1
Basic Information
- Insect
- Cryptocephalus moraei
- Gene Symbol
- -
- Assembly
- GCA_946251935.1
- Location
- CAMIUL010000528.1:81175-90635[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.32 5.9e+02 1.0 0.0 25 44 197 215 190 218 0.84 2 5 0.00018 0.33 11.4 0.1 19 52 217 250 212 252 0.90 3 5 0.00015 0.29 11.6 0.2 20 48 334 362 327 365 0.89 4 5 0.085 1.6e+02 2.8 0.0 25 44 491 509 483 516 0.79 5 5 0.0049 9.1 6.8 0.1 21 53 513 545 510 546 0.91
Sequence Information
- Coding Sequence
- ATGAATCCTCAAAGCAACTTATACCTGTGCCGTCTCTGCCTCCAAAAGACCCCTACCAAAGTGTCCATCTACCAGGGCGAGTTCCCGAAGATGGTGGAAGTGTTAACTTCAGTTAGGTTTCGAGAAGGTGACGGTCTACCCAGGTTCTCATGTGCGAAGTGTGTTCTAGATGTGAAACAGGCCCTGACGATCAGGAAACGTATCCTAACTACTCACAAGACCTTACTGGAGTGTTTACAGAAGAAACGAAGAGCAGCATTGTTACACAAACAGACTGTTGCTCAGAGCAATGTGCAGAGCAGAAATACTAACCCACCTGTGGTGAAACGAGAAACTATTGAAACTGTAAAAACTGTAAGTGTAATAAAAGTAATGGAAATGAAGCAGTCTGATGCCAGTGCGTTGACTAGCAATGATTCTAACACAACTGTTGAAAATACAATGTTGGAAGACAAAAATTCCGCCCATGAGGAAATTAAAGTCCAGAGTGCCCTCACAAGGGATAGAGTGGTATTCCACTGCAAGATCTGCGATATCAGTTTCACGGACAGGCGTTTAGCCGCCAACCACCGCAATAAGCACAAAAAGTCGAAATGTACGATCTGCGATAAGCTCATCACGACCAGTAACTTGAAAAAGCATATAGTAAGCCACTCTGAGAACCCGATAGATTGTAAATTATGTGGCACCACATGTAAGAACAGCGAAAGCCTCCGTGGGCACATGTTTTATCAACACAAGTGCACCCCAGATACTTTCGTTTGCGAGGAGTGCGGCCAAAAGTTCCGAACGAGATGTAAGTTCCACTTACACCAAAAGAAGGTCCATATCGGGCTGAGGAATTTCAAGTGCGAGACGTGCGGTAAGGGCTTTTTCACGAATGCAAACTTAAACACACATATCAACATGACGCATAAGAAATTACGACCACATATCTGTGAGTTCTGCGGCACTGGCTATTCGTCGATGTATGCGCTGAAGACCCACAAACGGCAACACACCAATGAAAAACCATTCACTTGTCGATATTGCTCGGAAGGTTTTCGCCAGAAGGTTTCCCTACGATCACATCTGAAATCTAAACATGGATATGAGGAGGCACAGGAAGTCTTCTGTGGTAAGTGTGGGAGGGGATTCGCGACCAATTACGCTTTGAACATCCACGAGAGGCTGCACTTGTCCGAGAAATGTAATCATTGCTCAGAAAGCTTTGCCGAAAATGTGAAACAGGCCATGACGATTAGGAAACGTATCCTAGCTACCCACAAGACTTTACTGGAATGTTTACAGAAGGAACGCAGGGCAGCATCGTTACACAAACCGACTGTTGCTCAGAGCAATCTACAGAGCAGGAAAACTAACCCACCCGTGAGTGTCCTGACAAGGGATAACATGGTATTCCACTGTGAGATCTGCGATATCATCATGGACAGTCATTTGGCCGCCAAACACTGCAGGAAGCACAAAAAGTCGAAATGTACGATCTGCGATAAGCTCATCACGAGCAGTAACTTGAAAAAGCATATATTAACCCACTCGGTGAACCCGATAGATTGTAAATTATGTGGTACCATATATAAAAACAGCGAAAGCCTCCGTGGGCACACATTCCATCAACACAAGTGCACCCCAGGCACTTTCGTGTGCGAGGAGTGCGACAAAAAGTTCCGAACGAGAGGTGAGTTACACTTACATCAAAAGAAGGTCCATATTGGGCTGAGGAATTTCAAGTGCGAGACGTGCGGTTTTCGTCACAAGGTTTCTCTACGATATCATCTGAAATCTAAACATGGATATGAGGAGGCACAGGAAGTCTTCTGTGGTAGGTGCGGGAAGGGATTCGCGACCAATTACGCTTTGAACATCCACATGAGGCTGCACATGTTCCAGAAATATGTGAAACAGGCCCTGACGATCCGGAAACGTATCCTAACTACCCACAAGACTTTACTGGAGTGCTTACAGAAGAAACGAAGGGCAGCATTGTTACACAAACAGACTGTTGCTCAGAGCAATGTGCAGAGCAGGAATACTAACCCACCTGTGGTGAAACGAGAAAATATTGAAACTGTAAAAACTGCTCTGACCTGA
- Protein Sequence
- MNPQSNLYLCRLCLQKTPTKVSIYQGEFPKMVEVLTSVRFREGDGLPRFSCAKCVLDVKQALTIRKRILTTHKTLLECLQKKRRAALLHKQTVAQSNVQSRNTNPPVVKRETIETVKTVSVIKVMEMKQSDASALTSNDSNTTVENTMLEDKNSAHEEIKVQSALTRDRVVFHCKICDISFTDRRLAANHRNKHKKSKCTICDKLITTSNLKKHIVSHSENPIDCKLCGTTCKNSESLRGHMFYQHKCTPDTFVCEECGQKFRTRCKFHLHQKKVHIGLRNFKCETCGKGFFTNANLNTHINMTHKKLRPHICEFCGTGYSSMYALKTHKRQHTNEKPFTCRYCSEGFRQKVSLRSHLKSKHGYEEAQEVFCGKCGRGFATNYALNIHERLHLSEKCNHCSESFAENVKQAMTIRKRILATHKTLLECLQKERRAASLHKPTVAQSNLQSRKTNPPVSVLTRDNMVFHCEICDIIMDSHLAAKHCRKHKKSKCTICDKLITSSNLKKHILTHSVNPIDCKLCGTIYKNSESLRGHTFHQHKCTPGTFVCEECDKKFRTRGELHLHQKKVHIGLRNFKCETCGFRHKVSLRYHLKSKHGYEEAQEVFCGRCGKGFATNYALNIHMRLHMFQKYVKQALTIRKRILTTHKTLLECLQKKRRAALLHKQTVAQSNVQSRNTNPPVVKRENIETVKTALT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00392089;
- 90% Identity
- iTF_00392089;
- 80% Identity
- iTF_00392089;