Cmor015021.1
Basic Information
- Insect
- Cryptocephalus moraei
- Gene Symbol
- -
- Assembly
- GCA_946251935.1
- Location
- CAMIUL010000528.1:81175-90635[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00062 0.054 14.3 2.2 1 23 172 194 172 194 0.97 2 13 0.01 0.88 10.5 0.6 2 23 198 218 197 218 0.95 3 13 0.0012 0.1 13.4 2.0 3 23 225 246 223 246 0.93 4 13 0.002 0.17 12.7 6.6 1 23 253 276 253 276 0.97 5 13 5.8e-07 5e-05 23.8 0.8 1 23 282 305 282 305 0.98 6 13 0.0013 0.11 13.3 1.9 1 23 311 333 311 333 0.96 7 13 6.2e-05 0.0054 17.4 2.5 1 23 339 362 339 362 0.97 8 13 8.3e-05 0.0072 17.0 0.2 3 23 372 392 371 392 0.97 9 13 0.99 86 4.2 0.4 2 11 396 405 396 409 0.88 10 13 0.0004 0.035 14.9 0.8 2 23 492 512 491 512 0.97 11 13 0.0088 0.76 10.7 1.2 3 23 519 540 517 540 0.90 12 13 2.8e-06 0.00024 21.7 2.2 1 23 547 570 547 570 0.97 13 13 7e-06 0.0006 20.4 0.2 3 23 607 627 606 627 0.97
Sequence Information
- Coding Sequence
- ATGAATCCTCAAAGCAACTTATACCTGTGCCGTCTCTGCCTCCAAAAGACCCCTACCAAAGTGTCCATCTACCAGGGCGAGTTCCCGAAGATGGTGGAAGTGTTAACTTCAGTTAGGTTTCGAGAAGGTGACGGTCTACCCAGGTTCTCATGTGCGAAGTGTGTTCTAGATGTGAAACAGGCCCTGACGATCAGGAAACGTATCCTAACTACTCACAAGACCTTACTGGAGTGTTTACAGAAGAAACGAAGAGCAGCATTGTTACACAAACAGACTGTTGCTCAGAGCAATGTGCAGAGCAGAAATACTAACCCACCTGTGGTGAAACGAGAAACTATTGAAACTGTAAAAACTGTAAGTGTAATAAAAGTAATGGAAATGAAGCAGTCTGATGCCAGTGCGTTGACTAGCAATGATTCTAACACAACTGTTGAAAATACAATGTTGGAAGACAAAAATTCCGCCCATGAGGAAATTAAAGTCCAGAGTGCCCTCACAAGGGATAGAGTGGTATTCCACTGCAAGATCTGCGATATCAGTTTCACGGACAGGCGTTTAGCCGCCAACCACCGCAATAAGCACAAAAAGTCGAAATGTACGATCTGCGATAAGCTCATCACGACCAGTAACTTGAAAAAGCATATAGTAAGCCACTCTGAGAACCCGATAGATTGTAAATTATGTGGCACCACATGTAAGAACAGCGAAAGCCTCCGTGGGCACATGTTTTATCAACACAAGTGCACCCCAGATACTTTCGTTTGCGAGGAGTGCGGCCAAAAGTTCCGAACGAGATGTAAGTTCCACTTACACCAAAAGAAGGTCCATATCGGGCTGAGGAATTTCAAGTGCGAGACGTGCGGTAAGGGCTTTTTCACGAATGCAAACTTAAACACACATATCAACATGACGCATAAGAAATTACGACCACATATCTGTGAGTTCTGCGGCACTGGCTATTCGTCGATGTATGCGCTGAAGACCCACAAACGGCAACACACCAATGAAAAACCATTCACTTGTCGATATTGCTCGGAAGGTTTTCGCCAGAAGGTTTCCCTACGATCACATCTGAAATCTAAACATGGATATGAGGAGGCACAGGAAGTCTTCTGTGGTAAGTGTGGGAGGGGATTCGCGACCAATTACGCTTTGAACATCCACGAGAGGCTGCACTTGTCCGAGAAATGTAATCATTGCTCAGAAAGCTTTGCCGAAAATGTGAAACAGGCCATGACGATTAGGAAACGTATCCTAGCTACCCACAAGACTTTACTGGAATGTTTACAGAAGGAACGCAGGGCAGCATCGTTACACAAACCGACTGTTGCTCAGAGCAATCTACAGAGCAGGAAAACTAACCCACCCGTGAGTGTCCTGACAAGGGATAACATGGTATTCCACTGTGAGATCTGCGATATCATCATGGACAGTCATTTGGCCGCCAAACACTGCAGGAAGCACAAAAAGTCGAAATGTACGATCTGCGATAAGCTCATCACGAGCAGTAACTTGAAAAAGCATATATTAACCCACTCGGTGAACCCGATAGATTGTAAATTATGTGGTACCATATATAAAAACAGCGAAAGCCTCCGTGGGCACACATTCCATCAACACAAGTGCACCCCAGGCACTTTCGTGTGCGAGGAGTGCGACAAAAAGTTCCGAACGAGAGGTGAGTTACACTTACATCAAAAGAAGGTCCATATTGGGCTGAGGAATTTCAAGTGCGAGACGTGCGGTTTTCGTCACAAGGTTTCTCTACGATATCATCTGAAATCTAAACATGGATATGAGGAGGCACAGGAAGTCTTCTGTGGTAGGTGCGGGAAGGGATTCGCGACCAATTACGCTTTGAACATCCACATGAGGCTGCACATGTTCCAGAAATATGTGAAACAGGCCCTGACGATCCGGAAACGTATCCTAACTACCCACAAGACTTTACTGGAGTGCTTACAGAAGAAACGAAGGGCAGCATTGTTACACAAACAGACTGTTGCTCAGAGCAATGTGCAGAGCAGGAATACTAACCCACCTGTGGTGAAACGAGAAAATATTGAAACTGTAAAAACTGCTCTGACCTGA
- Protein Sequence
- MNPQSNLYLCRLCLQKTPTKVSIYQGEFPKMVEVLTSVRFREGDGLPRFSCAKCVLDVKQALTIRKRILTTHKTLLECLQKKRRAALLHKQTVAQSNVQSRNTNPPVVKRETIETVKTVSVIKVMEMKQSDASALTSNDSNTTVENTMLEDKNSAHEEIKVQSALTRDRVVFHCKICDISFTDRRLAANHRNKHKKSKCTICDKLITTSNLKKHIVSHSENPIDCKLCGTTCKNSESLRGHMFYQHKCTPDTFVCEECGQKFRTRCKFHLHQKKVHIGLRNFKCETCGKGFFTNANLNTHINMTHKKLRPHICEFCGTGYSSMYALKTHKRQHTNEKPFTCRYCSEGFRQKVSLRSHLKSKHGYEEAQEVFCGKCGRGFATNYALNIHERLHLSEKCNHCSESFAENVKQAMTIRKRILATHKTLLECLQKERRAASLHKPTVAQSNLQSRKTNPPVSVLTRDNMVFHCEICDIIMDSHLAAKHCRKHKKSKCTICDKLITSSNLKKHILTHSVNPIDCKLCGTIYKNSESLRGHTFHQHKCTPGTFVCEECDKKFRTRGELHLHQKKVHIGLRNFKCETCGFRHKVSLRYHLKSKHGYEEAQEVFCGRCGKGFATNYALNIHMRLHMFQKYVKQALTIRKRILTTHKTLLECLQKKRRAALLHKQTVAQSNVQSRNTNPPVVKRENIETVKTALT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00392427;
- 90% Identity
- iTF_00392427;
- 80% Identity
- iTF_00392427;