Basic Information

Insect: Cryptocephalus moraei
Gene Symbol: -
Assembly: GCA_946251935.1
Location: CAMIUL010000288.1:177328-187444[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.65 1.2e+03 -0.0 0.1 22 45 62 85 57 93 0.80

2 12 1.7 3.2e+03 -1.4 0.1 25 46 93 114 81 117 0.79

3 12 0.00024 0.44 11.0 0.0 16 47 140 171 128 177 0.80

4 12 0.053 97 3.5 0.0 22 46 174 198 168 205 0.87

5 12 0.037 69 4.0 0.0 20 44 256 280 240 284 0.85

6 12 0.66 1.2e+03 -0.0 0.1 27 45 406 424 400 427 0.89

7 12 0.013 24 5.5 0.3 21 47 428 454 424 460 0.91

8 12 0.28 5.2e+02 1.2 0.0 21 52 482 513 472 515 0.86

9 12 0.0011 2 8.9 0.1 23 44 512 533 508 541 0.88

10 12 0.013 25 5.4 0.1 23 52 540 569 536 571 0.86

11 12 2.8 5.1e+03 -2.0 0.0 27 45 600 618 594 623 0.79

12 12 0.49 9e+02 0.4 0.1 18 45 619 646 614 654 0.82

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.65	1.2e+03	-0.0	0.1	22	45	62	85	57	93	0.80
2	12	1.7	3.2e+03	-1.4	0.1	25	46	93	114	81	117	0.79
3	12	0.00024	0.44	11.0	0.0	16	47	140	171	128	177	0.80
4	12	0.053	97	3.5	0.0	22	46	174	198	168	205	0.87
5	12	0.037	69	4.0	0.0	20	44	256	280	240	284	0.85
6	12	0.66	1.2e+03	-0.0	0.1	27	45	406	424	400	427	0.89
7	12	0.013	24	5.5	0.3	21	47	428	454	424	460	0.91
8	12	0.28	5.2e+02	1.2	0.0	21	52	482	513	472	515	0.86
9	12	0.0011	2	8.9	0.1	23	44	512	533	508	541	0.88
10	12	0.013	25	5.4	0.1	23	52	540	569	536	571	0.86
11	12	2.8	5.1e+03	-2.0	0.0	27	45	600	618	594	623	0.79
12	12	0.49	9e+02	0.4	0.1	18	45	619	646	614	654	0.82

Sequence Information

Coding Sequence: ATGAACAACAGCGGTCCAGCGGCGGCGTCCCTCAGAAACATCTGCTTGAAGTGTCGATCACGTTATGAGGAATTTTCGATGTACGTCGAGCGGTGCAAGGCCAACGCGGCCGTAATAGACGGACTACCGTCCGTCGGACGGGTGAAAGACATGCAATGCCGTCAATTAAAAAAGaaggaaattgacgagccttacggatgtccccactgcggtaaaactttcccgtggcgttcccacctgaagagacacatgcggacccactcggccgacaagggtttccggtgttcattctgtgacaaggccttcgtccaatacggccacctaagaaaccacgtgcggctccacaccggcgacagcccgttccagtgctcgacctgcggcaagaccttcaccgagcccggcagcctgaaggtccatcggaacatccacacgggcgagaaacctttcggctgtaccgtctgcggcaagacgttcacccagtccggcaacctgacgaggcaccgacggatccacgccggcgacaaacctttcagatgcgccgtctgcggcagggccttcaccgaatcgggcaacctgaagacccacatgcgtgtccatacgggcgacaggcccgtccgatgtacgcgctgcgacaagaccttcgcccatcacagcagcatgaactctcacctgcgcgtccacacgggcgacaagtccttcgaatgttcgtcgtgcgggaagtccttcgtccagcccgccgcgtttgagcgacacctgaagacccacacgggcgagaaacccttcgcctgtccggattgcgggaaacggttttccaattcgtccggcctgaacaggcacgtccgtactcacagTACCCGCCTCGATACTTCGAGCACCATGAGCCTCAGTACGACCAGGTGCGACTGGTGCCTGCAAGAGTCGCCCATCGAGACGATCGACGACGAGCTGTGGCGCTTCTGGAACATAATCAGCGTCGAGGATTCGACGGGTGCGTTCCTCAGGAACATCTGTCCGAGGTGCAAGACACGCTGCGAGGACTTCTCGACGTACGTCGAGCGGTGCAAGGTGCACGAGTCCGTGATCGACGAGATGCTGTCCGTCGCCCGTTTCAAGGCGGAGCCCGTCGACGTCGAGTACCATCCGCTGGTCAAGCAGGAGGAGGAGGAGGAggaggttccgccggcgggaggcttgtcgagacgccgtcgcttcgattgcgcaatctgcggcagaccgttctcccagtcataccacctgaagggccacctgcgcacccacacgggcgagaagccgtacaagtgtccgcattgcagtaaaaccttcgcgtggacgagcaacctgcagagccacctgtgcgtccgcgagaggccgttcaagtgttcgctgtgcgacaagggctttcacagtttcgtcaagttgaggaaccactcgcgcgtccacacgggcgacaagccgttcgagtgcgagcggtgcggcaaggcgttcaccgagtcaggtcagctagggaaacacatgaacgtccacacgggcgcgaaaccattcaagtgtacgatctgcgacaagagtttcaaccagtcggctaacttgaacaggcaccagcggtaccacgcgggcgtcaggccgttcaagtgttcgcactgcgataagacgttcccacaatcggcccacttgaagcgtcacctgagcgtccacactggcgacaaaccatacaagtgcaagttgtgtgacaagacgttcgccggcacgagcaatcggcgcgtccacatgtcggtccacgccggcgacaaacgtttcaagtgttcgcggtgcgacaggacgttcgtgcagtccagcgacctgaaggcgcacatgcgtaggcacaccgacgataatccgtataggtgttcgcagtgcgacgcgacgttcgctcgttccttcggtctgaaggctcacatgctcgtccatacgagtcggagaccttccgcgagctcCCATGGTAAACCTTAA
Protein Sequence: MNNSGPAAASLRNICLKCRSRYEEFSMYVERCKANAAVIDGLPSVGRVKDMQCRQLKKKEIDEPYGCPHCGKTFPWRSHLKRHMRTHSADKGFRCSFCDKAFVQYGHLRNHVRLHTGDSPFQCSTCGKTFTEPGSLKVHRNIHTGEKPFGCTVCGKTFTQSGNLTRHRRIHAGDKPFRCAVCGRAFTESGNLKTHMRVHTGDRPVRCTRCDKTFAHHSSMNSHLRVHTGDKSFECSSCGKSFVQPAAFERHLKTHTGEKPFACPDCGKRFSNSSGLNRHVRTHSTRLDTSSTMSLSTTRCDWCLQESPIETIDDELWRFWNIISVEDSTGAFLRNICPRCKTRCEDFSTYVERCKVHESVIDEMLSVARFKAEPVDVEYHPLVKQEEEEEEVPPAGGLSRRRRFDCAICGRPFSQSYHLKGHLRTHTGEKPYKCPHCSKTFAWTSNLQSHLCVRERPFKCSLCDKGFHSFVKLRNHSRVHTGDKPFECERCGKAFTESGQLGKHMNVHTGAKPFKCTICDKSFNQSANLNRHQRYHAGVRPFKCSHCDKTFPQSAHLKRHLSVHTGDKPYKCKLCDKTFAGTSNRRVHMSVHAGDKRFKCSRCDRTFVQSSDLKAHMRRHTDDNPYRCSQCDATFARSFGLKAHMLVHTSRRPSASSHGKP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00392041;
90% Identity: iTF_00392041;
80% Identity: iTF_00392041;