Ccet001070.1
Basic Information
- Insect
- Crossocerus cetratus
- Gene Symbol
- -
- Assembly
- GCA_963675795.1
- Location
- OY776662.1:3320450-3323947[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 1.3 3.6e+03 -2.2 0.0 39 50 252 263 252 271 0.87 2 5 0.00024 0.67 9.7 0.1 37 74 277 312 272 315 0.87 3 5 0.0097 27 4.6 0.1 31 58 327 355 309 369 0.78 4 5 0.0017 4.8 7.0 0.1 37 69 496 526 472 537 0.84 5 5 0.013 37 4.2 0.0 12 63 556 609 545 623 0.76
Sequence Information
- Coding Sequence
- ATGGAGAGGCCCCAAGGGCAATGGGGTCCGGGGCCGGGATCTCTCCAGGACGGAGGACTGTAcccgcagcaacagcaacaacagcagcaacagggCTCCTCGTCCTCCGGTAGTCCGCAGCAGGCCTGTGGACCCCCGGTCGAGGGGGAGAGCGGCCCCCCGCCTTCGTTGGCCTCGCCGGTGCCCTCGCCGTACCCTTCGGCGCCGCCCGAGCCTCAAGCCCTCACGCCACCGGACGACGACATACAATCGAACCAGGCCACctcccagcagcagcagcaacagacCCAACAACAGGtccaacagcaacagcaacaacagcagcaacaacagcaacagcaggttcagcagcagcaacagcaacagcagggGGGCCAGCAGGACCACtcgccgcagcagcagcagcagcaactcTCGGCGCACGACGTGGACCGGAGCGATTGCTTCCCGGGTGCCGGCGAGCTGCAGCAATACCCGCAGCACTACTTCAAGGAGACGAGGCCCCATCCGGCGCCGTCGGTGCCGCCGCACATGCTGACGCCCGGTGGGTTCTCGGCGCTACACTATCTCAAGCAGCCCGGGGTGATGCTGACTTCCCTCGGCCAGGGGGACGGCGGGCCCGGCCTCGACGGGCACCAGTACGCGAGCCCCGGTGGGCCCAACATGAGCACCGGCCTCCCCGACATCGTCCAGCAAAGTGGTAAATCGTCCAAGGGCGCGAATAGTGACCTCCGGCTGTTCAAGTGTTTGACGTGCGGCAAAGATTTTAAGCAGAAGTCGACTCTGCTGCAACACGAGCGCATCCATACGGACAGTCGGCCGTACGGGTGCCCCGAGTGCGGGAAGCGGTTCAGGCAACAGTCGCACCTAACGCAGCATCTCCGCATACACGCGAACGAGAAGCCGTACgcttgcgacttctgcgagcGCACGTTCCGGCAGCGCGCCATCCTCAACCAGCATCTGCGCATCCACTCGGGTGAGAAGCCATACCAATGTCCGGAGTGCGGAAAACACTTCCGTCAGAAGGCGATCCTGAATCAGCACGTCCGCACACACCAAGACGTGAGTCCGCACCTAATCTTTAAGAACGGGATGACGCCGACCCTCTGGCCGCAGGACGTCCCGTTCCCGCCGGAGGAGGGGAAGGAGGAGGTGGCGTCGACGTTCGGCGACACGGACACGCAATCGGGCGCCTTCAGTCCGGCGCCGGACGCGAATTCGATCCAGTACGCGGCGTACTTCAAGGACCCGAAGGGCGGGAACCACGCGGTGTTCGGCGCCGGGGGTTCAGGTAGCTTCGGGGCCCTCCAGTACATAAAGCAGCAGGGTGGTACCAAGAGCTGCCTGCCCGACGTGATACAGCACGGGCGCTCGGCCGGGATGCCGCTCTACGTGCGCTGCCCGATCTGTCAGAAGGAGTTCAAGCAGAAGTCGACCCTGCTGCAGCACGGCTGCATACACATCGAGTCGCGGCCGTACCCCTGCCCGGAGTGCGGCAAGAGGTTCAGGCAGCAGTCCCACCTCACCCAGCACTTGCGCATCCACACGAACGAAAAGCCGTACGGCTGCGGCTTCTGCGGGCGCAACTTCCGCCAGCGCACGATACTCAATCAGCATGTGCGCATCCACACCGGCGAGAAGCCGTACAAGTGCCACCAGTGCGGCAAGGACTTTCGTCAGAAGGCGATCCTGGACCAGCACACGCGCACCCACCAGGGCGACCGGCCGTTCTGCTGCCCGATGCCCAACTGCCGGCGGCGCTTCGCCACCGAGCCCGAGGTCAAGAAGCACATCGACAACCACATGAACCCGCACGCGGCCAAGGTCCGCCGGAACTCGAGCAGCGACACCAAGCCGCCGGGCACGCCGGCGGGCCACGGGCCCCTGCCGGTCCCGCGGGGCCTCACGCCCGCCGTCGTCAAGCCCGAGCTCTACTTCCCGCAGTGCTACGCGCCCGCCTTCAACCACCAGCCGCCGGTCTCGACGGTCCAGTTCCAGGGACAGGCGAACGGGGTGTCGGTCGCCGGCGAATTCAAGCCACCGACCGGCCTCCCGCCCCAGTGA
- Protein Sequence
- MERPQGQWGPGPGSLQDGGLYPQQQQQQQQQGSSSSGSPQQACGPPVEGESGPPPSLASPVPSPYPSAPPEPQALTPPDDDIQSNQATSQQQQQQTQQQVQQQQQQQQQQQQQQVQQQQQQQQGGQQDHSPQQQQQQLSAHDVDRSDCFPGAGELQQYPQHYFKETRPHPAPSVPPHMLTPGGFSALHYLKQPGVMLTSLGQGDGGPGLDGHQYASPGGPNMSTGLPDIVQQSGKSSKGANSDLRLFKCLTCGKDFKQKSTLLQHERIHTDSRPYGCPECGKRFRQQSHLTQHLRIHANEKPYACDFCERTFRQRAILNQHLRIHSGEKPYQCPECGKHFRQKAILNQHVRTHQDVSPHLIFKNGMTPTLWPQDVPFPPEEGKEEVASTFGDTDTQSGAFSPAPDANSIQYAAYFKDPKGGNHAVFGAGGSGSFGALQYIKQQGGTKSCLPDVIQHGRSAGMPLYVRCPICQKEFKQKSTLLQHGCIHIESRPYPCPECGKRFRQQSHLTQHLRIHTNEKPYGCGFCGRNFRQRTILNQHVRIHTGEKPYKCHQCGKDFRQKAILDQHTRTHQGDRPFCCPMPNCRRRFATEPEVKKHIDNHMNPHAAKVRRNSSSDTKPPGTPAGHGPLPVPRGLTPAVVKPELYFPQCYAPAFNHQPPVSTVQFQGQANGVSVAGEFKPPTGLPPQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00684322;
- 90% Identity
- iTF_00684322;
- 80% Identity
- iTF_00391490;