Caur016579.1
Basic Information
- Insect
- Crepidodera aurea
- Gene Symbol
- egg
- Assembly
- GCA_949320105.2
- Location
- OX439474.1:20210022-20223032[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.5 1.6e+04 -3.3 0.0 46 57 193 204 192 214 0.70 2 2 1.1e-14 1.1e-10 42.1 0.0 4 74 704 767 701 770 0.89
Sequence Information
- Coding Sequence
- ATGGATATTGATGAAGATGATCCTATGGAAATTGATGATTCCCTTCGAGCAGCTCCAATTATAGAACGAAGATCTGATGAATATACACCATTAGCAGATAATGTAAATTCACCACAAGCATCTTCAGAAACTGCACAAATTTTAGATCCTTTGAATACTACTAATAAACCGAGTTCAGCAGATGCTGATATCGTTATATtagatgatgatgatgattcaGAAAAAGATGCAGACGTGTTACCAAAAGAAGTACCAGAGCCTGAAAAAGCCAACCCTACTGTTGAAGATATAATAGATCTTGTTGAAAAGCCCAATAGTGTTCGTTGCTTGAACAGTAATTGTGATGGTAACAATACAGATTTTATCTTGGCACCAGACTTCTGTCTATCCTACTACAGGGTAAAACGATCTAAGAGTTACAAAGAAGAAATATGCCagGTATGCTATGATAAAGCTGTTGAAGATTTTGATAATTTGAGTACTAATTTAAAGAGTGGAAAACTGGTATTAGAATGTGATTTTCCCATTATCAATGAAACTTTACAAATAGAAGATAGTGATGAAGAAGAAGATGCGAAAGAAGAAGACATACAGTATTTGGATAAGGAAAACTTTGAGTTCATTAGTCAAAATATCGATGACATCATACAAAAGACTTtagatgaattcaaaattgagGAAATCTATAAATTGGAGtctgattatttaaaaaaagaatctGTTAAAGTTGAAGaggCCTGTTCTGATGTATCAAAAAAAGTGGGTGAAATTAGGAAAGTCTTAGACACAATTCAAATAGATCTGTATAATCAATTTAGACCAGATTTTAGAACATTAAAGGGTCTTTCAATTACTGATGATCATAGTCTTTCTCCAAATATTATGATAAAAACTGAAACTGCATTAGATACAAGTCAAAGAAAAAGCACAAGATCACATAAGCCAGTTTCATACGTTGAACTGGACGAGATTGGCAATTCGAATAGTCCTAAAGTAGCTGTTCCAGGGACTGAAATTGAGCCTCCAAAAGATTTACCACAAATTGTACCTATTGTTAGAACTCTTCCACAAGTTGgcgaGCTCTATTATATAATTAGGGAAAATTATCAAAGCAATTGGATAAGGGGTCGTTTACAAGAGATAATACCTCCAGACACATTATACAATGGCCAACGATACTCTACCACTTGCTACAAATTGGTGGAACTCAAGCAACAGAAAGAACGTATCGTGACAGGCAAACAAATGGCATATTTGAATTCCAGCAAAGTTCGGTTGCCTGTTGGTACAAGGGTAATTTCCGTGTTCAAAGAGATTAGTGCTGCTAGTGCTAACAAACCCAGACATGATCCTTATTATGCTGGTGTTGTTGCTGAGCAACCTTTTGAGGGAAATAAATATAGgtacTTAATATTCTTCGACATTGGCTATTCGCAGTATGTCAATTATAACAATGTTAATCTTGTTTTTGAATCGAGTCTGAATGTATGGGAAGATATTTACATAGATTCGAGACCGTTTATCAGAAAGTACTTGGAAAGTCAGGATAGGCCAATGGTAAAATTAGCGAAAGATCAAACAGTCAAAGTTGAATataacgGAAAATGGAGGCTATGCACAGTACTTGACGTAGACTGTTCATTAGTGCAAGTCTTTTTCGAGGTGCTCAAACGAACTGAATGGATTTACAGAGGCTCGTCAAGATTGAGTCCAATGTTTAGGGAAGAACAGGCTGCTACAAACAGATCTACTGGAGTTAGAACTTCGAGAAAATTGGGTCCTaaTGAATCTCAAACGGTTGTTCAGTACACACGAAAAGATGATTTCGTGCCGTCTAATGACAATCAAAGCAATCAAGATTCTCCAACAAATGTCAGGGCTGTAGCTAGAAAAAGTACTACGAGACCTCAGGCTAATGTACAGATTGAGGGAGCAGTGCCTTTCCTTCCGCAGGTTAAAGACACACCAGCGAATACCTCAGGACCTACAAGCAAAATAATGTATTTCACGCCCAGGGATCAAGTGATAATAAAAAGACAATACAAACCTCACAGTTGTGGTACTAAATGTAAGGAATTTCTTACTCACAACGTTACAACGTTACGTGGTCATAATCCTCTCTCGAAACCTCTGCTGTGCGGATGGGGTAGAATGACTCACAAAGCCAAGGGtagaaaagaaattatttacaAGgcACCTTGCGGTAGAATTTTGAGAAATATTGCCGAAGTTCATTATTATCTCAGATTATCAAAGAGCGAGATGACTGTAGATCTGTTTGATTTCAATCATATGGTAAGATGTTTGGCGGAATTCAGTGTTGAATGCAATCCCGATCCCAAGGATTTATCTAGGGGAATGGAACAAGTTCCCATACCAGTTATAAACGGAGTAAATAATGAAATGTTAGATTTTTGCAACTATTCAATCAAACGTGTTCCTATGGAAGGTGTTCACATGAATTTAGAAGCGGAATTTGTGTGTGGATGTGATTGCGATGATGACTGtattGACAAAACTAAGTGTGCCTGCTGGAGGTTAACACTAGAGGGCGCTAAATATGTCGGAAGGGACATTGACCCGAATTCTGTTGGTTATATTTATCGAAGACTTCCTGAACAGGTTATAACTGGAATTTACGAATGCAATTCCAGgtGTAAATGTACTTCTACATGTCTAAATAGGGTAGTTCAAAATCCTATGAGTTTAAAATTACAAGTGTTCAGGACTCTCAACCGTGGTTGGGGCATAAGATGTTTAAACGATGTTCCGCAAGGCAGTTTTATCTGTATTTATGCAGGTACTATTCATACTGAAGCAATGGCCAATGAGGATGGTATGGCATATGGAGACGAATATTTCGCCGAACTCGACTACATAGAAACCgtagaaaaatttaaagaagACTATGAGGCAGAGGTGATTGAAGAGGAGGAAGAAGAACGATATAAACGAAGAAAATCACCGATTGAGGAAGAAGACGAGGAAGATTCTATGCTTAGAAGAATGACTAGTAACAGTAAATATAAAAGGTATAATTACTTGGAGGATAATGATTTTACCCCTAGCCATCCTGATAAGATTTCAAGGTCAGATTCTGGGATAAGGACAAGGTTAAGAAAGAGATATCAAGAGGAAGAAAGTGATGAAAGTACTAAAAAAGAAGAACCCAAAACCGAAACTAGAATAGaacgagaaattaaaattaaaaaggaaatgTCAGAAGCGAAACTTGAATTGAAAGCAGCTCTCGAAGGACTTTCCGACAATATTGAAACTGTTACTATTAGTGATGAAGAAGATGagGGCCGAGAGGTACTGAGTTTTAATCCAAAGGCAAGTGGATTAGATGACAAAGGACCAACATATACTTCTGTTAGAGAATTATTTGGAAAAGAAGAATGTGTATATGTAATGGATGCTAAAAACGCCGGAAATATTGGCAGGTTCCTAAACCATTCGTGTTCCCCTAACGTCTTCGTCCAAAACGTTTTTGTGGATACTCATGATCCCCGTTTTCCGTGGGTGTCTTTCTTTTCTTCCCAGTTTATAAGAGCCGGAACAGAACTGACGTGGAATTACAACTACGATATAGGAAGCGTACCAGGAAGAGTGTTATACTGCCACTGTTCTTCATTGGAGTGCAAAGGGCGATTGTTGtaa
- Protein Sequence
- MDIDEDDPMEIDDSLRAAPIIERRSDEYTPLADNVNSPQASSETAQILDPLNTTNKPSSADADIVILDDDDDSEKDADVLPKEVPEPEKANPTVEDIIDLVEKPNSVRCLNSNCDGNNTDFILAPDFCLSYYRVKRSKSYKEEICQVCYDKAVEDFDNLSTNLKSGKLVLECDFPIINETLQIEDSDEEEDAKEEDIQYLDKENFEFISQNIDDIIQKTLDEFKIEEIYKLESDYLKKESVKVEEACSDVSKKVGEIRKVLDTIQIDLYNQFRPDFRTLKGLSITDDHSLSPNIMIKTETALDTSQRKSTRSHKPVSYVELDEIGNSNSPKVAVPGTEIEPPKDLPQIVPIVRTLPQVGELYYIIRENYQSNWIRGRLQEIIPPDTLYNGQRYSTTCYKLVELKQQKERIVTGKQMAYLNSSKVRLPVGTRVISVFKEISAASANKPRHDPYYAGVVAEQPFEGNKYRYLIFFDIGYSQYVNYNNVNLVFESSLNVWEDIYIDSRPFIRKYLESQDRPMVKLAKDQTVKVEYNGKWRLCTVLDVDCSLVQVFFEVLKRTEWIYRGSSRLSPMFREEQAATNRSTGVRTSRKLGPNESQTVVQYTRKDDFVPSNDNQSNQDSPTNVRAVARKSTTRPQANVQIEGAVPFLPQVKDTPANTSGPTSKIMYFTPRDQVIIKRQYKPHSCGTKCKEFLTHNVTTLRGHNPLSKPLLCGWGRMTHKAKGRKEIIYKAPCGRILRNIAEVHYYLRLSKSEMTVDLFDFNHMVRCLAEFSVECNPDPKDLSRGMEQVPIPVINGVNNEMLDFCNYSIKRVPMEGVHMNLEAEFVCGCDCDDDCIDKTKCACWRLTLEGAKYVGRDIDPNSVGYIYRRLPEQVITGIYECNSRCKCTSTCLNRVVQNPMSLKLQVFRTLNRGWGIRCLNDVPQGSFICIYAGTIHTEAMANEDGMAYGDEYFAELDYIETVEKFKEDYEAEVIEEEEEERYKRRKSPIEEEDEEDSMLRRMTSNSKYKRYNYLEDNDFTPSHPDKISRSDSGIRTRLRKRYQEEESDESTKKEEPKTETRIEREIKIKKEMSEAKLELKAALEGLSDNIETVTISDEEDEGREVLSFNPKASGLDDKGPTYTSVRELFGKEECVYVMDAKNAGNIGRFLNHSCSPNVFVQNVFVDTHDPRFPWVSFFSSQFIRAGTELTWNYNYDIGSVPGRVLYCHCSSLECKGRLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01047279; iTF_00792180;
- 90% Identity
- -
- 80% Identity
- -