Caur027278.1
Basic Information
- Insect
- Crepidodera aurea
- Gene Symbol
- -
- Assembly
- GCA_949320105.2
- Location
- OX439476.1:15721074-15721388[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.1e-10 1.7e-07 31.9 0.0 3 38 16 51 15 57 0.88 2 2 9.9 5.4e+03 -1.7 0.0 26 35 86 95 84 100 0.68
Sequence Information
- Coding Sequence
- ATGCCTCGAAATTACGTCCGAAAGACTGAAACAAAATACCAAATTGAAAATCTTCGCCATGCAATCGAAGAtgttaaaagtaaaaagctCACATTGGGCCAAGCTGCTACCAAATACTCAGTACCAAAAACGACATTATTTAAGCAACTAAAACAAAACGAATTGAAGACACCAAAAAAAGGTCGGCATGCGGTATTTAATAAAGAACAAGAGGGCCAACTAGAAAAATACATACTTGATTGCTGCAAGTCTTTTTATGGCATAACACCAAATTCATTACGTAGACTTGCTTTTCGATATGCTGAAGGTAACTAA
- Protein Sequence
- MPRNYVRKTETKYQIENLRHAIEDVKSKKLTLGQAATKYSVPKTTLFKQLKQNELKTPKKGRHAVFNKEQEGQLEKYILDCCKSFYGITPNSLRRLAFRYAEGN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01284420; iTF_00736562; iTF_00174091;
- 90% Identity
- -
- 80% Identity
- -