Acir002836.1
Basic Information
- Insect
- Athalia circularis
- Gene Symbol
- -
- Assembly
- GCA_963978495.1
- Location
- OZ021697.1:18439361-18439705[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.8e-11 2.7e-08 33.8 0.0 3 41 16 54 15 57 0.92 2 2 5.4 5.1e+03 -2.3 0.0 26 35 86 95 84 98 0.80
Sequence Information
- Coding Sequence
- ATGCCTCGAAATTACATACGAAAGACTGAACCAAAATACCAAATTGAAGATCTTCACCATGCAATCGAAGatgtcaaaaacaaaaagctcACATTGGGCCAAGCTGCTACCAAATACTCAGTACCAAAAACAACATTATTCAACCAACTAAAACGAAACGAATTCAAGATACCGAAAAAAGGTCGGTACACTGTATTCAATAAAGAACAAGAAGATCagctagaaaaatatatacttgaTTGCTGCAAGTCTTTTTACGGCATAACACCAAATTCATTACGCAGAATTGCTTTTCGTTTTGCTGAAGCTAACAAACTAAAACACAATTTTAACAAAGAAACCTAG
- Protein Sequence
- MPRNYIRKTEPKYQIEDLHHAIEDVKNKKLTLGQAATKYSVPKTTLFNQLKRNEFKIPKKGRYTVFNKEQEDQLEKYILDCCKSFYGITPNSLRRIAFRFAEANKLKHNFNKET
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00387135;
- 90% Identity
- -
- 80% Identity
- -