Clig008332.1
Basic Information
- Insect
- Craniophora ligustri
- Gene Symbol
- -
- Assembly
- GCA_905163465.1
- Location
- LR990955.1:2119555-2119977[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.4e-08 6.5e-06 26.5 0.0 3 40 17 54 15 57 0.89
Sequence Information
- Coding Sequence
- ATGCCGAAAGTACGCGTCAGGACAACTGAAAAGGCTTCCTGGTCTTCTGATAGCCTAGATAAAGCTATACAGCTCATTGATGGCGGTTCTTCTATAAGAAATGCTGCTAAAGTAATGGGAATCCCTTTTTCAAGCCTTCAGAAGAGGATGAAAAAAGGTTCTACCTTAGGACCACATCTAGGACGATTCACTGTCTTTAGTCCTGAGGCAGAAGCCGAGCTAGCAAACTTGGTGAAGAAAATGGCAAATATTTTCTATGGTTGCACTGCTAATCAAATCAGAAAAGTCGCTTTCGAATATGCTGAAAAATTAAATTTGAAGCACAATTTTAATCAAGCTTCAAAAATGGCTGGACGCGATTGGATGCATGCTTTTATGGCTAGAAATAACATTCTATTAGAAAACCGGAAGCGACCAGCATAA
- Protein Sequence
- MPKVRVRTTEKASWSSDSLDKAIQLIDGGSSIRNAAKVMGIPFSSLQKRMKKGSTLGPHLGRFTVFSPEAEAELANLVKKMANIFYGCTANQIRKVAFEYAEKLNLKHNFNQASKMAGRDWMHAFMARNNILLENRKRPA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01569272;
- 90% Identity
- iTF_00755523; iTF_00933668; iTF_01202404; iTF_00111589; iTF_01531945; iTF_00842593;
- 80% Identity
- -