Pbra016817.1
Basic Information
- Insect
- Pieris brassicae
- Gene Symbol
- -
- Assembly
- GCA_905147105.1
- Location
- LR989937.1:20830788-20831201[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.5e-09 3.6e-06 26.9 0.0 3 39 17 53 15 57 0.86
Sequence Information
- Coding Sequence
- ATGCCGAAAGTACGCGTCAGGACAACTGAAAAGGCTTCCTGGTCTTCTGATAGCCTAAATAAAGCTATACAGCTCATTGATGGCGGTTCTTCTATAAGAAATGCTGCTAAAGAAATGGGAATCCCTTTTTCAAGCCTTCAGAAGAGGATAAAAAAAGGTTCTACCTTAGCACCACATCTAGGACGATTCACTGTCTTTAGTCGTGACGAAGAAGCCGAGCTAGCGAACTTGGTGAAGAAAATGGCAAATATTTTCTATGGTTGCACTGCTAATCAAATCAGAAGAGTCGCTTTCGAATATGCTGAAAAATTAAATGTGAAGCACAATTTTAATCAAGCTTCAAAAATGGCTGGACGCGATTGGTTGCATGAAAAGAGAAAACATGGAAGGCAAAGGACAAGGAATAAAGACTAA
- Protein Sequence
- MPKVRVRTTEKASWSSDSLNKAIQLIDGGSSIRNAAKEMGIPFSSLQKRIKKGSTLAPHLGRFTVFSRDEEAELANLVKKMANIFYGCTANQIRRVAFEYAEKLNVKHNFNQASKMAGRDWLHEKRKHGRQRTRNKD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01531945;
- 90% Identity
- iTF_00383596;
- 80% Identity
- -