Clat014267.2
Basic Information
- Insect
- Crambus lathoniellus
- Gene Symbol
- lrrfip2
- Assembly
- GCA_949710035.1
- Location
- OX453301.1:3401622-3412770[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 3.3e-65 3.5e-61 208.9 10.0 18 266 32 293 30 317 0.83 2 3 6 6.5e+04 -6.7 14.5 1 46 313 357 311 378 0.69 3 3 0.1 1.1e+03 0.4 0.7 212 238 366 391 358 392 0.77
Sequence Information
- Coding Sequence
- ATGCCGACAAGGCATACGACATGTACGGCAATGCGGCCTCGCTGCGCGCCACCGCCGGCGCCGCTGACTTCAAGGGTGCGTTATATAATACTTATCCGCATGCGCGAGCTGGAGCGGCAACAGCGCGAGCAGGAGGACCATGCCGACAAGGCGTACGACATGTACGGCAACGCGGCCTCGCTGCGCGCCACCGCCGCTGACTTCAAGGAGTCGGTGGGGCGGCGCGGCGGGTCGCGGCTGGCCAGCCTTGGCTCGGGGGCGCTCCACTCACCCCGGCGCAGCTCCGAGGACTCCGCCGACGACGCCTTCAGTATTAAGGATCTCAGGCATGAGCTGAAAGAGGTTGAAGAGAAGTTCCGCAAGGCGATGATCCTGAACGCGCAGATGGACAACGACAAGGCGGCGCTCGGCTACCAGCTGGAGCTGCTCAAGGACCGGATAGAGGAGTTGCACGAGGAGTATGCGCAGCTACAGCGCGAGCACAAAGAAAAGTGTTCAGCCCACGAGCGACTGAAACGCGAGCACGCGTCGCTCGAGCGTGAAGTGTGCGCGGCCCGCGACGCCGTGCGCGCGCGCGACGCGGCCGCCGCGCACGCGGGGTTCGCGTTCGTGGACGCCGCCGTCAAGGCCAACGGGGACGCCGACGGGGGCGACGCCGCGCCGGGGTTCGGCTCCGTGCCGCCGCTCGCGCTCGTGTCGCACCAGTCCGAGCTGATGCTCAACGAGGCCGGCGAGGGCACGCTAGACGTACGGTTGCAGAAGCTGACAGCGTCGCGGCAAGCGCTAGAAGGGGAGGTGCGGCGACTCAAGTTACAGCTTAACGAAGAGCGCGCCGCCACGCACAACGGGCTGCCCCACCACCGCGACCTGGACAACGAGCTGGAGACCCTTCGGCGCTGCGTGTCGGAGGCGAAggcgcgcgcggcgcgggcggagGCCGAGGCGGCGCTACAAGGCGCGGCCGTGGCGCGGCTTGAGGCGCAAGTGGCTCGCCTGCGCGCGAGACAAGACCATCAGGACGAACACGAGGAACAACTCAAGCAGGAGCGCCGCCGACTGCAGCGAGAGGCGCGGGAAGCCCTGAACCGCGTGGAGGAGTTGGAGACGGAGAACGGCCACCTCACCAAGCGGCTGGACAAACTCAAGAACGCCAAGTCCGCGCTGCTCAAAGAGCTGTGA
- Protein Sequence
- MPTRHTTCTAMRPRCAPPPAPLTSRVRYIILIRMRELERQQREQEDHADKAYDMYGNAASLRATAADFKESVGRRGGSRLASLGSGALHSPRRSSEDSADDAFSIKDLRHELKEVEEKFRKAMILNAQMDNDKAALGYQLELLKDRIEELHEEYAQLQREHKEKCSAHERLKREHASLEREVCAARDAVRARDAAAAHAGFAFVDAAVKANGDADGGDAAPGFGSVPPLALVSHQSELMLNEAGEGTLDVRLQKLTASRQALEGEVRRLKLQLNEERAATHNGLPHHRDLDNELETLRRCVSEAKARAARAEAEAALQGAAVARLEAQVARLRARQDHQDEHEEQLKQERRRLQREAREALNRVEELETENGHLTKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00318872;
- 90% Identity
- -
- 80% Identity
- -