Clat041319.2
Basic Information
- Insect
- Crambus lathoniellus
- Gene Symbol
- retn
- Assembly
- GCA_949710035.1
- Location
- OX453314.1:17985635-17995781[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.6e-19 9.5e-16 59.8 0.0 17 89 15 85 6 85 0.93 2 2 6.6 3.9e+04 -3.1 0.0 25 38 214 227 176 228 0.66
Sequence Information
- Coding Sequence
- ATGGGTGATGGCCGATCCCTATTCGTAACTCCTACTAGATGTAGCACTCCAATCAACAGACTTCCAATTATGGCCAAGTCAGTTTTAGACCTGTACGAGCTTTACAACCTCGTGATTGCCCGCGGAGGGCTTGTGGAAGTCATCAACAAGAAACTCTGGCAGGAGATCATCAAGGGGCTCAGGCTGCCATCGTCCATCACGTCTGCTGCATTCACACTCCGCACACAGTACATGAAATACCTGTACGACTACGAATGCGAGAAGAAAAACCTCTCGACCAGGAGTGAGCTGGACGCAGCTATAGAGGGCAACAAGAGGGAAGGCCGGCGCGCCTCCGGACAGTACGACGCACAAGCGGCTTTAGCTATGCCCCCCCTGAACCGCGTGCCGGCATCTCTCGCGCAGTTGTCCCAGCACATGCAGCCGCTGTCACTGTCCCTGGGGGGAGGGGTACCGAGGCTGCCCCCGCTGCCCCCCCACGCACCGCACATCTCGCAGCACGACATCGAGTACCGAGTGAGGGAGTACATGAAGATGATCCAGCAGCAACGAGAGCTGATGAGGAACGGTTCCGAATCGCCTCCCGGATCCAACGGCCCGGCGCCCATAATGTCGCCCCGCGACGCGGCCGCTCTTAGTGCCATCGACGTCTCCCGCCTGACGCTGTGGTCGCtctacaacaacaacaacaacagccCGCAGCCAGAGCTTGAGCCACAACGCGAGGCTCTAAACCTCAGCGAGAGCCCCAACTCCAGTACCAGCGGCGGAAAGCGCGAGGCCTGCCGTTCCCCCCCGCCGCCCGCCAAGCGACGCACCCCGAGACCGCCTTCGCCCCGCGCGCCCTCGCCGCCGCGCTGTCCGCCGACCGCTGTCAATGGGAATTCGCCCGCGAATGGAGTGAATGGTGCAGCGTTCAAGATTACCACCAGAGGAGACGCAACCACTGGCGACCAGCAACTAGTCGTCTCAATAGAACTGAACGGCGTCACATACGAGGGCGTCTTATTCCCATCACAGAGCGGGAGCGGCCAGAACGGCCACCGGCAAATGGTGTCTTAA
- Protein Sequence
- MGDGRSLFVTPTRCSTPINRLPIMAKSVLDLYELYNLVIARGGLVEVINKKLWQEIIKGLRLPSSITSAAFTLRTQYMKYLYDYECEKKNLSTRSELDAAIEGNKREGRRASGQYDAQAALAMPPLNRVPASLAQLSQHMQPLSLSLGGGVPRLPPLPPHAPHISQHDIEYRVREYMKMIQQQRELMRNGSESPPGSNGPAPIMSPRDAAALSAIDVSRLTLWSLYNNNNNSPQPELEPQREALNLSESPNSSTSGGKREACRSPPPPAKRRTPRPPSPRAPSPPRCPPTAVNGNSPANGVNGAAFKITTRGDATTGDQQLVVSIELNGVTYEGVLFPSQSGSGQNGHRQMVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00723754;
- 90% Identity
- iTF_00006076;
- 80% Identity
- -