Cses006840.1
Basic Information
- Insect
- Cotesia sesamiae
- Gene Symbol
- -
- Assembly
- None
- Location
- scaffold:26956-28414[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.00041 1.2 9.3 0.5 12 51 140 179 128 182 0.86 2 7 0.4 1.2e+03 -0.3 0.1 27 44 184 201 177 206 0.86 3 7 0.00011 0.34 11.1 0.3 21 52 206 237 202 238 0.90 4 7 0.023 69 3.7 0.1 20 52 233 265 230 267 0.83 5 7 0.015 45 4.3 0.2 21 45 262 286 255 289 0.88 6 7 1.1e-06 0.0033 17.5 0.2 21 52 290 321 286 323 0.85 7 7 9.3e-06 0.028 14.6 0.1 20 51 345 375 329 378 0.87
Sequence Information
- Coding Sequence
- ATGAATGCAGATTCTTTATCGTTTGAAACTGTAGTTCTGAAAGTTGAAAACAGTGACAAGGACTGGCAAGTAGGAGATAATTCTGACAGTCAAGGATTCAAGGATTTTGATCATCCAATAGACATTGACGACGTAAAACTGGAGAAACTTGAAGATTCTCCAGAAGACATTGAAGCACCTGATTTTATGAACAAAAATGTGAATAGTACTTTTTTAAAAGAAGAATTATTCCTTGATAATAATCAAAGTTCATCGATTGCAATGAAGAAGAAAAATGAAATTAAAACTTTGCATGAAAATTCAGGAAAAAATATAAAAAATTACACCTGCGATTATTGTCTAGTGACTTTTGATAAAAAGTCAATAATTCGGACGCATATTAAGACTCATCAAGCAGACTTGTTCCATGAAAAGTCTCAGAACAAACCCCCAGAAATAGAGTCGGAAGAAAAACCATATTCTTGTGACGTCTGTCCTTCAAAGTTCCGTTTCGAAAGATATTTAAAACAGCACAAGCGAATGATCCACACAGAAAAAAAGCGTTTCCCTTGCGACAGTTGTTCTTCGGCATTCCGAACAAGAACCCACTTGAAGAGACACATGGTTTGTCATACGGGAGAACAGCCCTACTCTTGCGACATCTGTAGGACCCAGTTCCGGCGAAGAGGTAGCCTCAAAAAACATATGTCAATTCACAAAGAAGAAAAACCTTACCAGTGTAATATTTGTTCGTTGAAATTCCGGCTCAGAAATTACTTAAGCAGTCATGTTAGAATCCACTCTACGGAGAAACCTTTTGTTTGCAGCGTTTGTTCCTCCCAGTTCCGCCACAGAAGCACTTTAAACATGCACCTCAAGAGCCACGAGCAAGAGGAACCTTGTTTGTGCGGAATCTGCTCCGCAAAGTTTAGGAACAAGAAGAATCTTAGAGAACATATGAGGATTCACGTCGGGAACAAACCTCATAAGTGTGGACTTTGTTCTTCCAGGTTCTTGAAGAAAAGTCTTTTGGAAAAACACATGCGGGTACACACTAAGGAACGCCCGTTTTTATGTAACGTTTGTTCCGCTGATTTCCGGCAGAAAAGAGCTTTGGATCAACATATGAAAGTTCATTTTAATAAAAAAACTTTGTGA
- Protein Sequence
- MNADSLSFETVVLKVENSDKDWQVGDNSDSQGFKDFDHPIDIDDVKLEKLEDSPEDIEAPDFMNKNVNSTFLKEELFLDNNQSSSIAMKKKNEIKTLHENSGKNIKNYTCDYCLVTFDKKSIIRTHIKTHQADLFHEKSQNKPPEIESEEKPYSCDVCPSKFRFERYLKQHKRMIHTEKKRFPCDSCSSAFRTRTHLKRHMVCHTGEQPYSCDICRTQFRRRGSLKKHMSIHKEEKPYQCNICSLKFRLRNYLSSHVRIHSTEKPFVCSVCSSQFRHRSTLNMHLKSHEQEEPCLCGICSAKFRNKKNLREHMRIHVGNKPHKCGLCSSRFLKKSLLEKHMRVHTKERPFLCNVCSADFRQKRALDQHMKVHFNKKTL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00379854;
- 90% Identity
- iTF_00382097; iTF_00379992; iTF_00379854;
- 80% Identity
- iTF_00382097;