Cfla001812.1
Basic Information
- Insect
- Cotesia flavipes
- Gene Symbol
- -
- Assembly
- None
- Location
- scaffold:32447-33864[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.33 1.2e+03 -0.3 0.0 25 45 110 130 103 138 0.84 2 8 0.00035 1.2 9.3 0.5 12 51 142 181 130 184 0.86 3 8 0.34 1.2e+03 -0.3 0.1 27 44 186 203 179 208 0.86 4 8 9.6e-05 0.33 11.0 0.3 21 52 208 239 204 240 0.90 5 8 0.038 1.3e+02 2.7 0.2 20 49 235 264 232 267 0.78 6 8 0.01 36 4.5 0.2 21 45 264 288 259 291 0.88 7 8 9.4e-07 0.0033 17.5 0.2 21 52 292 323 288 325 0.85 8 8 8.5e-06 0.029 14.4 0.1 20 51 347 377 337 380 0.86
Sequence Information
- Coding Sequence
- ATGAATGCAGATTCTTTATCGTTTGAAACTGTAGTTCTGAAAGTTGAAAACAGTGACAAGGACTGGCAAATAGGAGATAATTCTGACAGTCAAGGATTCAAGGATTGTAATTTTGATTATCGAATAGACATTGACGACGTAAAACTGGAGAAACTTGAAGATTCTCCAGAAGACATTGAAGCACCTGATTTTATGAACAAAAATGTAAATAGTACTTCTTTAAAAGAAGAATTATTCCTTGATAATAATCAAAGTTTATCGATTGCAATGAAGAAGAAAAATGAAATTAAAACTTTGCATGAAAATTCAGGAAAAAATACAAAAAATTACACCTGCGATTATTGTCTAGCGACTTTTGATAAAAAGTCAATAATTCGGACGCATATTAAGACTCATCAAGCAGACTTGTTCCATGAAAAGTCTCAGAACAAACCCCCAGAAATAGAGTCGGAAGAAAAACCATATTCTTGTGACGTCTGTCCTTCAAAGTTCCGTTTCGAAAGATATTTAAAACAGCACAAGCGAATGATCCACACAGAAAAAAAGCGTTTCCCTTGCGACAGTTGTTCTTCGGCATTCCGAACAAGAACCCACTTGAAGAGACACATGGTTTGTCACACGGGAGAACAGCCCTACTCTTGCGACATCTGTAGGACCCAGTTCCGGCGAAGAGGTAGCCTCAAAAAACATATGTCAATTCACAAAGAAGAAAAACCTTACCAGTGTAATATTTGTTCGTTGAAATTCCGGCTCAGAAATTACTTGAGCAGTCATGTTAGAATCCACTCGACGGAGAAACCTTTTGCTTGTAGCGTTTGTTCCTCCCAGTTCCGCCACAGAAGCACTTTAAACATGCACCTCAAGAGCCACGAGCAAGAGGAACCTTGTTTGTGCGGAATCTGCTCCGCAAAGTTTAGGAACAAGAAGAATCTTAGAGAACATATGAGGATTCACGTCGGGAACAAACCTCATAAGTGTGTACTTTGTTCTTCCAGGTTCTTGAAGAAAAGTCTTTTGGAAAAACACATGCGGGTACACACTAAGGAACGCCCCTTTTTATGTAACGTTTGTTCCGCTGATTTCCGGCAGAAAAGAGCTTTGGATCAACATATGAAAGTTCATTTTAATAAAAAAACTTTGTGA
- Protein Sequence
- MNADSLSFETVVLKVENSDKDWQIGDNSDSQGFKDCNFDYRIDIDDVKLEKLEDSPEDIEAPDFMNKNVNSTSLKEELFLDNNQSLSIAMKKKNEIKTLHENSGKNTKNYTCDYCLATFDKKSIIRTHIKTHQADLFHEKSQNKPPEIESEEKPYSCDVCPSKFRFERYLKQHKRMIHTEKKRFPCDSCSSAFRTRTHLKRHMVCHTGEQPYSCDICRTQFRRRGSLKKHMSIHKEEKPYQCNICSLKFRLRNYLSSHVRIHSTEKPFACSVCSSQFRHRSTLNMHLKSHEQEEPCLCGICSAKFRNKKNLREHMRIHVGNKPHKCVLCSSRFLKKSLLEKHMRVHTKERPFLCNVCSADFRQKRALDQHMKVHFNKKTL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00379854;
- 90% Identity
- iTF_00382229;
- 80% Identity
- iTF_00379854;