Crub002003.1
Basic Information
- Insect
- Cotesia rubecula
- Gene Symbol
- -
- Assembly
- None
- Location
- scaffold:727-1845[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0017 6.4 7.3 0.3 21 43 77 99 56 105 0.83 2 10 0.44 1.7e+03 -0.4 0.0 21 44 105 128 102 136 0.82 3 10 0.073 2.8e+02 2.1 0.0 21 44 133 156 129 163 0.87 4 10 0.00023 0.89 10.1 0.0 22 48 162 188 157 194 0.86 5 10 0.11 4.2e+02 1.5 0.1 22 39 190 207 187 215 0.77 6 10 0.00054 2 8.9 0.3 21 43 217 239 205 249 0.80 7 10 1.3 4.7e+03 -1.9 0.1 22 35 246 259 240 271 0.73 8 10 0.00087 3.3 8.2 0.2 21 44 273 296 261 300 0.90 9 10 3.9e-05 0.15 12.6 0.1 21 47 301 327 298 334 0.86 10 10 0.99 3.8e+03 -1.5 0.0 23 45 331 353 327 356 0.83
Sequence Information
- Coding Sequence
- TTTATCAAAGAAGAACCTAAAGATACTGATGATAAAAATGATAAAATTTCAATTTTTACTGAAGAGGCCGACGCTGAAAAAACCAACACCACCTTACCTGAAACTTCAATAGCGAAACGTACAAGATCCAAGCAAAGTCCAAAATCTTCACCAAAAACCAGTAACACAAAAAAGAAGACTAAAAAATTAAATCCAAAAAGTATCAACTCAGAACCGAAGCAAATTGAATCAGCGGAAGTTTACACATGTGAAGTATGTTCCGCGAAATTCCATCGAAAAAGAAATCTCAATCAACACAAAGTAATTCATACCAGCGAAAGGTCTTTTGGATGCAAATTATGTTCCTGGAGATTCAAGCTAAATAGTCATCTGAAGCGACACATGCTAACGCATTCGGAAGAGAAACCTTACGCTTGCAATATGTGTCCCTGGAAATTCCGACTGAAGCATCAGCTAAAATCTCACCTGGGCACCCACATGGAAGAAAAGTCCTACACATGCGATATCTGTTCCAAAAAATTCCACCAGAAAGATAGTTTGAGAAAACATCTTAGTATCCACTTGGATGAAAAACCTTTTTCTTGCGACGTTTGTTTTCGAAGCTTCCGAGTACGCGGTCAAATGAAAATTCACAAGCGAATCCACTCTGGAGAACAACCCTACGCTTGCGAAATTTGTCCTGCGAAGTTCCGTGTAAGGGGTCTATTGAACAGACACAAACTAGCTCATGCTGAAGAAAAACCTTATCCTTGTAATTTTTGTCCTGCGGCGTTTCATTTAAAGTCTCGGTACAAATCCCACATGCTTATTCATACAGGAGAAAAACCCTACCTATGTGAGGTTTGTTCTGCGCAATTCAGACATAAGCGTTCGTTAAATAAACACACTTTGATTCACACTGGAGAAAAACCTTACACTTGCAAGGTTTGTTTGAGGCAATTTCGGGAAAAAAGGACTTTGGATAGACATATGGTTGTTCATATCGAAGGTAAACCTTTTGGCTGTGATTTATGTTCTTTCAAATCTCGCCGGAAGAAAGGGTTGAACGCGCATATGAAAATTCATTTAAATTCAACTTTTTCTAAGAAAATGAAATTAGACGAGATATATAAACTTTGA
- Protein Sequence
- FIKEEPKDTDDKNDKISIFTEEADAEKTNTTLPETSIAKRTRSKQSPKSSPKTSNTKKKTKKLNPKSINSEPKQIESAEVYTCEVCSAKFHRKRNLNQHKVIHTSERSFGCKLCSWRFKLNSHLKRHMLTHSEEKPYACNMCPWKFRLKHQLKSHLGTHMEEKSYTCDICSKKFHQKDSLRKHLSIHLDEKPFSCDVCFRSFRVRGQMKIHKRIHSGEQPYACEICPAKFRVRGLLNRHKLAHAEEKPYPCNFCPAAFHLKSRYKSHMLIHTGEKPYLCEVCSAQFRHKRSLNKHTLIHTGEKPYTCKVCLRQFREKRTLDRHMVVHIEGKPFGCDLCSFKSRRKKGLNAHMKIHLNSTFSKKMKLDEIYKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00381327; iTF_00379315; iTF_00379121;
- 90% Identity
- iTF_00381327;
- 80% Identity
- iTF_00381327;