Ccon005617.1
Basic Information
- Insect
- Cotesia congregata
- Gene Symbol
- -
- Assembly
- None
- Location
- contig:10337801-10345221[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.24 8.9e+02 0.8 0.0 25 44 148 167 133 175 0.80 2 9 0.01 38 5.2 0.0 21 46 172 197 164 203 0.85 3 9 0.12 4.4e+02 1.8 0.1 21 45 200 224 195 228 0.87 4 9 1.5e-05 0.055 14.3 0.1 23 52 230 259 224 261 0.84 5 9 0.39 1.4e+03 0.1 0.1 22 43 257 278 254 283 0.79 6 9 0.00085 3.1 8.7 0.5 21 43 284 306 267 316 0.80 7 9 0.95 3.5e+03 -1.1 0.1 22 35 313 326 309 338 0.74 8 9 0.025 93 4.0 0.4 21 43 340 362 337 367 0.89 9 9 0.0044 16 6.4 0.0 21 46 368 393 366 401 0.85
Sequence Information
- Coding Sequence
- ATGGAGGTTAATGATGTTCTTTGCGAGGAAAGGATTTTCAAAATTGAAATTGAGGAATTTCAAATTGATGAAAATGATTGTCAAGGATCTTATTTATGTCAATCTGTAGATTTTATGAAGAAAGAGGAACTTGGCAATAATTCAATAATTACTGAGGAAATTACTGTTGTACCAGCTGAATTTATCAAAGAAGAACCTGAAGATACTGATGATGAAAATTCAAACATTTCAATTTCTATTGAAGAGTCCGATACCGAAAAAACCACCACTACCTTACCCGGAACTTCAATATCAAAACGTACAAGATCCAAGCAAAGTCCAAAATCTTCACCAAAAATCAGTAACACAAAAAAGAAGACTAAAAAATTAAATCCAAAAAGTATCAATTCAGAATCAAAAAAATTTGCAAAAAGCACATTACAAATTGAACCGGCGGAAGTTTATACATGTGAAGTATGTTCCGCAAAATTCCATCGAAGAGGAAACTTCAATAAACACAAAGTAGTCCATACCGGCGAAAAGCCTTTTGGATGTAAATTATGTCCCTTGAAATTCAATCAAAATAGTTCTCTGAAGCGACACATGCACACGCATTCTGAGGAGAAACCTTACGCTTGCAATATGTGTCCCTGGAAATTCCGACTGAACCATCAGCTACAATCTCACCTGAGCACCCACATGGAAGACAAGTCCTACACTTGCGATATCTGTTCCGGAAAATTCCGCCAGAAACATAGTTTAAAAAGACATCTTAGTATCCACTTCGATGAAAAACCTTTTTCTTGCGATGTTTGTTTACGAAGCTTTCGGGAACGCGGTCAAATGAAGATTCACAAGCGAATCCACTCTGGAGAACAACCCTACGCTTGTGAAATTTGTCCTGCGAAGTTCCGCGTAAGAGGTCTGTTGAACAGACACAAACTAGCTCATGCTGAAGAAAAACCTTATTCTTGCAATTTTTGTCCTGCGGCGTTTCATTTAAAGTCTCGGTACAAAACCCACATGCTTATTCATACAGGAGAAAAACCCTACCAATGTGAGGTTTGTTCTGCGCAGTTCAGACATAAGTGTTCGTTAAATAAACACACTTTGATTCACACTGGAGAAAAACCTCACACTTGCAAGGTTTGTTTGAAGCAATTTCGCGAAAAAGGGACTTTGGATAAACATATGGTTGTTCATATCGAAGGTAAACCTTTTGGCTGTGATTTCTGTTCTTTCAAATCCCGCCGGAAGAAAGGTTTGAATGCGCATATGAAAATTCATTTAGATGATTTTCCGTTTGAGAAATTTTGA
- Protein Sequence
- MEVNDVLCEERIFKIEIEEFQIDENDCQGSYLCQSVDFMKKEELGNNSIITEEITVVPAEFIKEEPEDTDDENSNISISIEESDTEKTTTTLPGTSISKRTRSKQSPKSSPKISNTKKKTKKLNPKSINSESKKFAKSTLQIEPAEVYTCEVCSAKFHRRGNFNKHKVVHTGEKPFGCKLCPLKFNQNSSLKRHMHTHSEEKPYACNMCPWKFRLNHQLQSHLSTHMEDKSYTCDICSGKFRQKHSLKRHLSIHFDEKPFSCDVCLRSFRERGQMKIHKRIHSGEQPYACEICPAKFRVRGLLNRHKLAHAEEKPYSCNFCPAAFHLKSRYKTHMLIHTGEKPYQCEVCSAQFRHKCSLNKHTLIHTGEKPHTCKVCLKQFREKGTLDKHMVVHIEGKPFGCDFCSFKSRRKKGLNAHMKIHLDDFPFEKF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00381521;
- 90% Identity
- iTF_00379121;
- 80% Identity
- iTF_00379121;