Cfla011546.1
Basic Information
- Insect
- Cotesia flavipes
- Gene Symbol
- -
- Assembly
- None
- Location
- scaffold:467-6583[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.1 3.7e+03 -1.9 1.6 26 43 171 188 135 197 0.57 2 14 0.016 54 4.0 0.1 17 41 190 214 182 215 0.75 3 14 0.069 2.4e+02 1.9 0.0 21 43 215 237 212 241 0.88 4 14 1.1 4e+03 -2.0 0.0 18 44 267 293 264 302 0.77 5 14 0.029 1e+02 3.1 0.1 26 44 303 321 298 325 0.91 6 14 0.00015 0.54 10.4 0.2 21 47 326 352 321 359 0.83 7 14 2 6.9e+03 -2.8 0.0 24 39 413 428 411 437 0.75 8 14 0.00092 3.2 7.9 0.0 21 43 438 460 432 466 0.88 9 14 4.7 1.6e+04 -4.0 0.1 27 44 472 489 471 493 0.81 10 14 0.015 51 4.1 0.1 26 46 500 520 495 522 0.90 11 14 0.0022 7.6 6.7 0.0 19 51 522 553 519 555 0.90 12 14 0.6 2.1e+03 -1.1 0.0 18 29 635 646 633 655 0.84 13 14 0.11 3.7e+02 1.3 0.0 22 33 700 711 692 726 0.76 14 14 0.022 75 3.5 0.4 20 51 782 813 760 826 0.86
Sequence Information
- Coding Sequence
- ATGGATATTGTTAATGACATATCGTTCAAAAAAGTATTTAAAATTGAAAAACATGATCCGGAGGACTTAGAAATTAATAATGTTACGGAGGAACATAATTATCCTGACGAATCGAACAATATGAGTGCTCTAGAAAGTGTTTTTATAAATATTGATCTTCCTGTCAGCATAAAATCAGAAGAACCTGATAATGAAGAAGCTGCGGACCCTCTGGCAGGAGTTACCGAAACGCATTCTGAGGAATCACCGACGGGTTCAGACTTGAAAGGATTATTAGACGGCAATTTCACTAACTGTTCTCTAGATAACAATCAGTATACATTGATTGCTAATGAAAATTTAATTTTAATAAAAAATGAATACGACAGCTCACCTGAGGTAAATAGTAATGTCAAAGAAACTAATGTAAAATCATCAAAGAGGCCAAAAATTACTCAGAAAAAGGAAAGACAGTCTCGTAGTAAAAAGAAAAGAAATTCAAAACCTGCAAAAAAGAAAGCTAAACTTTTGAAATGCGACAGGTGTCCTGCTCTATTTGACTACAATAGTAACCTTGAAAGACATAGGCGAACTCACTCGCCGCAAAAACCGTACACTTGCGACATTTGTGGAACAAAATTTGCTTGGAAACGTAATTTAAAAGGGGAAAAGCCATGGCATTGTGAGATTTGCCCAGCACAATTTAGTCAGAAGTTGTACTTGAAAAACCATAAAATTGTTCATGCAGATCAATTACCGTTTGAATGTGAGACTTGTTCCGAAAGATTTGATACGGAAAGCAATCTTTCAGAGCACAAAAAGTCGCATTCGAAAAATTTATGGCAATGTACAATTTGTAATAAAAAATTTACCTGGAAACATCATCTAGAGAAACACCTGCTAACACATACCAGAGCGCGACGTTACAGGTGTCCAACGTGTCCAGCAGCGTTTGGTTCTAACAGTAATCTCACTAGACATATTCGCTCTCATACGGGCGAGAAACCATTTCAATGTGAAATTTGCGAAGCAAGATTTAGTGAAAAACGTAATCTTCAAAATCATATTAATACCCATACAGGAGAAAAGCCGTGGCAGTGTGACAACTGTCCAGCGAAATTTGGATCCAGGTCCACGTTGACCAAGCACAAACAGCTGCATAAGCAACCACTTTTATTTTCGTGTGATCACTGCTCGCAGAAATTTATTTCAAAACGAAAGCTCATCAAACATATATTAACCCATGCGGACAATTGGCCATTTCAATGTGAAATTTGTTCAGCAAGATTCACCGGGAAACGGAGTATGTATTTTCACTCTCTGACTCACACAGGTGAAAAACCGTGGGAGTGTGAAATTTGTTTTGCTAAATTTGCTCAAAAAGCTTATTTAACAAGGCATAAACTTACTCATATAAATTTGCTATCATATAAGTGTCCTCACTGTTCAGAGCGATTTCATTCGGTAGAAAATCTTAATGAACATATACCAATTCACATGGCTCCTAAAATGGTTATACAGTGTGATTTATGTTCAGCAACGTTTCGTGAAATACGGAATTTTAACAGTCATATGGTACTTCATTCTCAAGGAGAAGAGCCTTGGAAATGTGAAATTTGTTCAATAAGTTTTAGATGGAAGTTTGATTTAGATAAACATAAACTTGATCATTATACAAAAAATGAAAATTCAACTTTGGGTGATTTATCGAATTCCGCAGATAATGATTTAGATGATGATGATGATGTTATAATTGAAATGGAGTATTTTAATTCAACAAAAGAGATACACAGCAATAAAAATCCTATTTACGTTGAACATGAAAAGTATTCAGCTTTTAATGATAAAAAAAAGCTACCGTCAATAAAAAATGGGCCTAGTAAATCTTCAGACGTTTCTAGTGATATAAAAATATTAGACGTAAGATCTCTGAGTGAACAGGACAATAATTGTGATATAAAAATATTAGACGTAAGATCTCTGAGTGAACAGGACAATAATTGGTCGCAAAATGAAGAAAATACTCAAGAAAATATTGATTTAGTTGAAGACAATGATTGTAAAATAGAGTTTGTAAGGACTAATTGTGTAAATGCACCTTTTCAAACTCTCAGAGCAGGAGAACCGTGGACTTGTGGTATCTGTTTTTCGGAATTCGGTGACATTTCTCAAATGTTAAAGCACATGCGGACCCACAAAGGTGATAAACTTTTTGAATGTAGCACTTGTTTTGAAAGGTTCTCGAATAAAAGAGATTTAACCAATCACATGCATACTCATACTAATGAGGCCTATAGGTGTTATATCTGTTCATTGACTTTCAATAAAAAATTTAATTACAATAATCACATGCGACTTCATAATACGGAGAAACAACCTTATCGATGTGATGTCTGCTCGATAAGATTTTCTGAACGACGTCATTTAACCAGTCATTTAAGAATTCATACTGATGATAAACCATTCCAGTGCGAAGTTTGCAAGTCGAAATTCAAGTGGAAATATCTTTTAACCCGACACCGGCGAATTCATCCAGAGTAA
- Protein Sequence
- MDIVNDISFKKVFKIEKHDPEDLEINNVTEEHNYPDESNNMSALESVFINIDLPVSIKSEEPDNEEAADPLAGVTETHSEESPTGSDLKGLLDGNFTNCSLDNNQYTLIANENLILIKNEYDSSPEVNSNVKETNVKSSKRPKITQKKERQSRSKKKRNSKPAKKKAKLLKCDRCPALFDYNSNLERHRRTHSPQKPYTCDICGTKFAWKRNLKGEKPWHCEICPAQFSQKLYLKNHKIVHADQLPFECETCSERFDTESNLSEHKKSHSKNLWQCTICNKKFTWKHHLEKHLLTHTRARRYRCPTCPAAFGSNSNLTRHIRSHTGEKPFQCEICEARFSEKRNLQNHINTHTGEKPWQCDNCPAKFGSRSTLTKHKQLHKQPLLFSCDHCSQKFISKRKLIKHILTHADNWPFQCEICSARFTGKRSMYFHSLTHTGEKPWECEICFAKFAQKAYLTRHKLTHINLLSYKCPHCSERFHSVENLNEHIPIHMAPKMVIQCDLCSATFREIRNFNSHMVLHSQGEEPWKCEICSISFRWKFDLDKHKLDHYTKNENSTLGDLSNSADNDLDDDDDVIIEMEYFNSTKEIHSNKNPIYVEHEKYSAFNDKKKLPSIKNGPSKSSDVSSDIKILDVRSLSEQDNNCDIKILDVRSLSEQDNNWSQNEENTQENIDLVEDNDCKIEFVRTNCVNAPFQTLRAGEPWTCGICFSEFGDISQMLKHMRTHKGDKLFECSTCFERFSNKRDLTNHMHTHTNEAYRCYICSLTFNKKFNYNNHMRLHNTEKQPYRCDVCSIRFSERRHLTSHLRIHTDDKPFQCEVCKSKFKWKYLLTRHRRIHPE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00379807;
- 90% Identity
- iTF_00379807;
- 80% Identity
- iTF_00379807;