Cfla011546.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cotesia flavipes
Gene Symbol
-
Assembly
None
Location
scaffold:467-6583[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 3.9e-05 0.0038 17.5 0.7 2 23 171 192 170 192 0.97
2 19 0.062 6.1 7.5 0.2 1 16 198 213 198 214 0.83
3 19 0.0014 0.14 12.7 0.7 2 23 220 241 219 241 0.95
4 19 6.5e-05 0.0064 16.9 1.0 1 23 247 269 247 269 0.98
5 19 0.00012 0.012 16.0 4.9 2 23 275 296 274 296 0.97
6 19 1.3e-07 1.3e-05 25.3 0.2 1 23 302 324 302 324 0.99
7 19 1.3e-06 0.00013 22.2 0.6 1 23 330 352 330 352 0.99
8 19 0.00026 0.026 14.9 0.6 2 23 359 380 358 380 0.96
9 19 4.1e-05 0.0041 17.5 3.7 1 23 386 408 386 408 0.98
10 19 0.33 32 5.2 1.2 1 23 414 436 414 436 0.82
11 19 0.0001 0.0098 16.3 0.3 2 23 443 464 442 464 0.97
12 19 0.00037 0.036 14.5 1.2 1 20 470 489 470 492 0.94
13 19 0.0076 0.75 10.3 0.3 2 23 500 521 499 521 0.95
14 19 0.042 4.1 8.0 0.5 2 23 529 550 528 550 0.93
15 19 0.0025 0.24 11.9 0.2 2 23 704 725 703 725 0.97
16 19 2.6e-05 0.0025 18.1 4.6 1 23 731 753 731 753 0.98
17 19 5.3e-05 0.0052 17.1 3.8 1 23 758 780 758 780 0.98
18 19 2.3e-05 0.0023 18.2 2.4 1 23 787 809 787 809 0.99
19 19 0.0011 0.11 13.0 2.6 1 23 815 837 815 837 0.99

Sequence Information

Coding Sequence
ATGGATATTGTTAATGACATATCGTTCAAAAAAGTATTTAAAATTGAAAAACATGATCCGGAGGACTTAGAAATTAATAATGTTACGGAGGAACATAATTATCCTGACGAATCGAACAATATGAGTGCTCTAGAAAGTGTTTTTATAAATATTGATCTTCCTGTCAGCATAAAATCAGAAGAACCTGATAATGAAGAAGCTGCGGACCCTCTGGCAGGAGTTACCGAAACGCATTCTGAGGAATCACCGACGGGTTCAGACTTGAAAGGATTATTAGACGGCAATTTCACTAACTGTTCTCTAGATAACAATCAGTATACATTGATTGCTAATGAAAATTTAATTTTAATAAAAAATGAATACGACAGCTCACCTGAGGTAAATAGTAATGTCAAAGAAACTAATGTAAAATCATCAAAGAGGCCAAAAATTACTCAGAAAAAGGAAAGACAGTCTCGTAGTAAAAAGAAAAGAAATTCAAAACCTGCAAAAAAGAAAGCTAAACTTTTGAAATGCGACAGGTGTCCTGCTCTATTTGACTACAATAGTAACCTTGAAAGACATAGGCGAACTCACTCGCCGCAAAAACCGTACACTTGCGACATTTGTGGAACAAAATTTGCTTGGAAACGTAATTTAAAAGGGGAAAAGCCATGGCATTGTGAGATTTGCCCAGCACAATTTAGTCAGAAGTTGTACTTGAAAAACCATAAAATTGTTCATGCAGATCAATTACCGTTTGAATGTGAGACTTGTTCCGAAAGATTTGATACGGAAAGCAATCTTTCAGAGCACAAAAAGTCGCATTCGAAAAATTTATGGCAATGTACAATTTGTAATAAAAAATTTACCTGGAAACATCATCTAGAGAAACACCTGCTAACACATACCAGAGCGCGACGTTACAGGTGTCCAACGTGTCCAGCAGCGTTTGGTTCTAACAGTAATCTCACTAGACATATTCGCTCTCATACGGGCGAGAAACCATTTCAATGTGAAATTTGCGAAGCAAGATTTAGTGAAAAACGTAATCTTCAAAATCATATTAATACCCATACAGGAGAAAAGCCGTGGCAGTGTGACAACTGTCCAGCGAAATTTGGATCCAGGTCCACGTTGACCAAGCACAAACAGCTGCATAAGCAACCACTTTTATTTTCGTGTGATCACTGCTCGCAGAAATTTATTTCAAAACGAAAGCTCATCAAACATATATTAACCCATGCGGACAATTGGCCATTTCAATGTGAAATTTGTTCAGCAAGATTCACCGGGAAACGGAGTATGTATTTTCACTCTCTGACTCACACAGGTGAAAAACCGTGGGAGTGTGAAATTTGTTTTGCTAAATTTGCTCAAAAAGCTTATTTAACAAGGCATAAACTTACTCATATAAATTTGCTATCATATAAGTGTCCTCACTGTTCAGAGCGATTTCATTCGGTAGAAAATCTTAATGAACATATACCAATTCACATGGCTCCTAAAATGGTTATACAGTGTGATTTATGTTCAGCAACGTTTCGTGAAATACGGAATTTTAACAGTCATATGGTACTTCATTCTCAAGGAGAAGAGCCTTGGAAATGTGAAATTTGTTCAATAAGTTTTAGATGGAAGTTTGATTTAGATAAACATAAACTTGATCATTATACAAAAAATGAAAATTCAACTTTGGGTGATTTATCGAATTCCGCAGATAATGATTTAGATGATGATGATGATGTTATAATTGAAATGGAGTATTTTAATTCAACAAAAGAGATACACAGCAATAAAAATCCTATTTACGTTGAACATGAAAAGTATTCAGCTTTTAATGATAAAAAAAAGCTACCGTCAATAAAAAATGGGCCTAGTAAATCTTCAGACGTTTCTAGTGATATAAAAATATTAGACGTAAGATCTCTGAGTGAACAGGACAATAATTGTGATATAAAAATATTAGACGTAAGATCTCTGAGTGAACAGGACAATAATTGGTCGCAAAATGAAGAAAATACTCAAGAAAATATTGATTTAGTTGAAGACAATGATTGTAAAATAGAGTTTGTAAGGACTAATTGTGTAAATGCACCTTTTCAAACTCTCAGAGCAGGAGAACCGTGGACTTGTGGTATCTGTTTTTCGGAATTCGGTGACATTTCTCAAATGTTAAAGCACATGCGGACCCACAAAGGTGATAAACTTTTTGAATGTAGCACTTGTTTTGAAAGGTTCTCGAATAAAAGAGATTTAACCAATCACATGCATACTCATACTAATGAGGCCTATAGGTGTTATATCTGTTCATTGACTTTCAATAAAAAATTTAATTACAATAATCACATGCGACTTCATAATACGGAGAAACAACCTTATCGATGTGATGTCTGCTCGATAAGATTTTCTGAACGACGTCATTTAACCAGTCATTTAAGAATTCATACTGATGATAAACCATTCCAGTGCGAAGTTTGCAAGTCGAAATTCAAGTGGAAATATCTTTTAACCCGACACCGGCGAATTCATCCAGAGTAA
Protein Sequence
MDIVNDISFKKVFKIEKHDPEDLEINNVTEEHNYPDESNNMSALESVFINIDLPVSIKSEEPDNEEAADPLAGVTETHSEESPTGSDLKGLLDGNFTNCSLDNNQYTLIANENLILIKNEYDSSPEVNSNVKETNVKSSKRPKITQKKERQSRSKKKRNSKPAKKKAKLLKCDRCPALFDYNSNLERHRRTHSPQKPYTCDICGTKFAWKRNLKGEKPWHCEICPAQFSQKLYLKNHKIVHADQLPFECETCSERFDTESNLSEHKKSHSKNLWQCTICNKKFTWKHHLEKHLLTHTRARRYRCPTCPAAFGSNSNLTRHIRSHTGEKPFQCEICEARFSEKRNLQNHINTHTGEKPWQCDNCPAKFGSRSTLTKHKQLHKQPLLFSCDHCSQKFISKRKLIKHILTHADNWPFQCEICSARFTGKRSMYFHSLTHTGEKPWECEICFAKFAQKAYLTRHKLTHINLLSYKCPHCSERFHSVENLNEHIPIHMAPKMVIQCDLCSATFREIRNFNSHMVLHSQGEEPWKCEICSISFRWKFDLDKHKLDHYTKNENSTLGDLSNSADNDLDDDDDVIIEMEYFNSTKEIHSNKNPIYVEHEKYSAFNDKKKLPSIKNGPSKSSDVSSDIKILDVRSLSEQDNNCDIKILDVRSLSEQDNNWSQNEENTQENIDLVEDNDCKIEFVRTNCVNAPFQTLRAGEPWTCGICFSEFGDISQMLKHMRTHKGDKLFECSTCFERFSNKRDLTNHMHTHTNEAYRCYICSLTFNKKFNYNNHMRLHNTEKQPYRCDVCSIRFSERRHLTSHLRIHTDDKPFQCEVCKSKFKWKYLLTRHRRIHPE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00379994;
90% Identity
iTF_00379994;
80% Identity
iTF_00379994;