Cfla011224.1
Basic Information
- Insect
- Cotesia flavipes
- Gene Symbol
- -
- Assembly
- None
- Location
- scaffold:343-8073[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.29 1e+03 -0.1 0.1 25 43 146 164 114 170 0.81 2 14 0.011 38 4.5 0.0 21 46 170 195 161 201 0.86 3 14 0.12 4.1e+02 1.2 0.1 21 45 198 222 194 228 0.87 4 14 2.8e-05 0.098 12.8 0.3 22 49 227 253 223 258 0.85 5 14 0.1 3.6e+02 1.3 0.1 22 43 255 276 252 281 0.84 6 14 0.0019 6.5 6.9 0.5 21 43 282 304 269 315 0.83 7 14 0.92 3.2e+03 -1.7 0.1 21 39 310 328 305 341 0.72 8 14 0.23 7.9e+02 0.2 0.2 21 43 338 360 335 365 0.87 9 14 0.013 44 4.3 0.1 21 44 366 389 353 394 0.89 10 14 0.0014 4.9 7.3 0.1 21 44 778 801 770 805 0.88 11 14 0.0028 9.6 6.4 0.2 22 44 807 829 801 833 0.87 12 14 2.4e-05 0.082 13.0 0.2 21 44 834 857 831 861 0.92 13 14 1.4e-05 0.049 13.7 0.2 21 45 862 886 858 889 0.91 14 14 8e-05 0.28 11.3 0.2 21 45 890 914 888 921 0.90
Sequence Information
- Coding Sequence
- ATGGAGGTTAATGATGTTCCTTGCGAGGAAAGGATTTTTAAAATTAAAAAAGAGGAATTTCAAATTGATGAAAATAATTGTCATCCAGAATCTTATTTATTTAAATCCATAGATTTTGTAAAGCAAGAAGAAAATAATTCAATGAGCGAGGAAATTACTATTGTACCTGAATTTATCAAAGAAGAACCTAAAAATACTGACGATGAAAATTATAAAATTTCAATTTCTACTGAAGAGCCCGACGCCGTAAAAACCGACACTACCTTTACATCAGAAAATTCAATAGCAAAACGTACAAGATCCAAGCGAACTCCAAAATCTTCTCCAAAAACCACAAACCCAAAAAATAAGACTAAAAAAGTAAATCCAAAAAGTATCACCTTAAAATCAAAGAAATTTGCAAAAAGCACTTTGCAAATTGACCCGGCGGAAGTTTACACATGTGAAGTATGTTCCGCGAAATTCCAGCGAAAAGGTAATTTCAATAAACACAAATTAGTCCATACCGGCGAAAAGCCTTATGGATGCGACTTATGCTCGTTGCGATTCAATCAAAACAGTTCTCTGAAGCGACACATGCACACGCACTCGGAGGAGAAGCCTTACGCTTGCAGTATGTGTCCCTGGAAATTCCGACTGAACCATCAGTTGCAATCTCACTTGAACACCCACATGGAAGAGAAGCGCTACACGTGCGATGTCTGTTCCAAAAAATTCCGGCAGAAACACAGCTTGAGAAGACATCTTGGTATCCACTTCAACGAAAGACCTTTTTCTTGCGACGTTTGTTTCAGGAGCTTTCGAGAAAAGACTCAAATGAAAATCCACAAGCGAATCCACTCCGGAGAGCAACCCTACGCTTGCGAAATTTGTCCTGCGAAGTTCCGCGTAAGGGGTCTGCTGAACAGACACAGACTAGCTCATGCTGAAGAAAAACCTTATGCTTGCAATTTTTGTCCCGCGACTTTTCACTTGAAGTCTCGGTACAAAACCCACATGCTTATTCATACAGGGGAAAAACCCTACCAATGTGACGTATGTTCCGTTCAGTTCCGGCATAAGTGTTCGTTGAATAAACACACTTTGATTCACACCGGAGAAAAACCTTACACTTGCCAGGTTTGCTTGAAGCAATTTCGCGAGAAAGGGACTCTGGATAAGCATATGGTTGTTCATATGGAAGAATCAAGATTGGGAAAAATGAACATGGAAGTTTTGCCATTTGAAACAGTGGTTATAAAAGTTGAAAAGAATGATGAGAAAAAAAGGGCATTAGAGAAAAGAAGACAACAGTCAATAAAGCGAACGTCAAAACTCTCAAGCGAGGAATTAGAAGAAAGAAAGAAGAAAAAAACGCTTTATATGAGAAATTACAGAGCCAAACAGTCAGAGGAAGCCAGAGCAGCTCGTTTGCAGCAAGTGCGTGATTCCATGGCTCAGATCCGAGCCTCTGAATCAAACCAAGCTAGGGAAGTCCGCTTGCAGCAAATGCGAAATTCTATGGCTGAAATCCGAGCCTCAGAATCAAAGAAAGCTAGAGCAGCTCGTTTGCAGCAAATGCGAAAGTCCATGGCTAAGATCCGAGCCTCTGAATCGGAGGAAGCTAGAGAAGTCCGCTTGCAGCAAATGCGACAACGAAATGTTGAAGATTGGCGAATAAATGAGGTTCTGGAAAATCCTTTAGACATTGGAAAAATAGAAGATGAACTTGAAGGAGATTCAGTGGTTATAGAAAATACTATTGATGTACCTGATGTCAAAGTTATTGACAGTGTAAATTTTACGTTTGAAGGATCAGGATCAGTTTTAAATGAGGAAAAAAGTGACGACGAGTTTAACGCGAATCTAGATTATCCGATAGATATTGAAGAAATCAAGATCGAAGAAACTGAAGATACAATAATTTATCCAAATATTACTGATGTATCAAAGACGACAAAAATCAAAAAAAATGCAGCAAATGATCTCCAAGAAGTTCCCACAGAAGAAACTCCAAAAAATGAATCCATGTGGAAAACATTCAAATGCGATAAATGCGCAATGGAATTTGTCAATGAAAGTTCTCTAGCAACTCACTCAAAAAAATACAAATTTAACTGTGACGTCTGTCCAAAGTGTTTTATATCAAGACAAGGATTGTGGTACCACCTAAAATCGCACTACGGCCCCAAACCATTTAAATGCGAAGTATGTCCGGCTGATTTTGAGTTGAAATCCGGATTGATAGAGCACTCACGAACTCACGCAGGAGACATGAGCTTCTCTTGTACCCTGTGTGCCTACAAAACTCGGTACAAAAGTTCCTTGAACAGACACGCTCGTGTTCATACCAGAGAGAAGCCTTTTGCGTGTGACCTCTGTTCCGCGACCTTCCGGGAACAAGGTCACTTGAAGAGACACAGTCGGATTCATACTGGAGAAAAGCGCTACACCTGTGATGTCTGTTCCGCCAAGTTCAGGGAGAAGAGCACCTTGAGGCAGCACATTATTATTCACACTGGGGAAAAACCCTACACTTGTTCTGTTTGTGCGGCTAACTTTAGGCAGCAGAATCATCTGGATAGACATATGGTCACCCACAATGGAGAAAAACCCTACACTTGTTCTGTTTGTGCGGCTAATTTTAGGCAGCAGAATCATCTGGATAGACATATGGTCATCCACAATGGAGAAAAACCCTACACTTGTTCTGTTTGTGCGACTAACTTTAGGCAGCAGAATCATCTGGATAGACATATGGTCATCCACAGTGGAGAAAAAAGTTATGCTTGTCAAATTTGTTCCTTGGAGTTCCATGGATTGAGTACGTTTGCGAACCACGTGCTAACTCACGATGAAAAGGAATGA
- Protein Sequence
- MEVNDVPCEERIFKIKKEEFQIDENNCHPESYLFKSIDFVKQEENNSMSEEITIVPEFIKEEPKNTDDENYKISISTEEPDAVKTDTTFTSENSIAKRTRSKRTPKSSPKTTNPKNKTKKVNPKSITLKSKKFAKSTLQIDPAEVYTCEVCSAKFQRKGNFNKHKLVHTGEKPYGCDLCSLRFNQNSSLKRHMHTHSEEKPYACSMCPWKFRLNHQLQSHLNTHMEEKRYTCDVCSKKFRQKHSLRRHLGIHFNERPFSCDVCFRSFREKTQMKIHKRIHSGEQPYACEICPAKFRVRGLLNRHRLAHAEEKPYACNFCPATFHLKSRYKTHMLIHTGEKPYQCDVCSVQFRHKCSLNKHTLIHTGEKPYTCQVCLKQFREKGTLDKHMVVHMEESRLGKMNMEVLPFETVVIKVEKNDEKKRALEKRRQQSIKRTSKLSSEELEERKKKKTLYMRNYRAKQSEEARAARLQQVRDSMAQIRASESNQAREVRLQQMRNSMAEIRASESKKARAARLQQMRKSMAKIRASESEEAREVRLQQMRQRNVEDWRINEVLENPLDIGKIEDELEGDSVVIENTIDVPDVKVIDSVNFTFEGSGSVLNEEKSDDEFNANLDYPIDIEEIKIEETEDTIIYPNITDVSKTTKIKKNAANDLQEVPTEETPKNESMWKTFKCDKCAMEFVNESSLATHSKKYKFNCDVCPKCFISRQGLWYHLKSHYGPKPFKCEVCPADFELKSGLIEHSRTHAGDMSFSCTLCAYKTRYKSSLNRHARVHTREKPFACDLCSATFREQGHLKRHSRIHTGEKRYTCDVCSAKFREKSTLRQHIIIHTGEKPYTCSVCAANFRQQNHLDRHMVTHNGEKPYTCSVCAANFRQQNHLDRHMVIHNGEKPYTCSVCATNFRQQNHLDRHMVIHSGEKSYACQICSLEFHGLSTFANHVLTHDEKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00379806;
- 90% Identity
- iTF_00379806;
- 80% Identity
- iTF_00379806;