Cfla011224.1
Basic Information
- Insect
- Cotesia flavipes
- Gene Symbol
- -
- Assembly
- None
- Location
- scaffold:343-8073[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.00017 0.016 15.6 1.4 1 23 146 168 146 168 0.98 2 19 4.1e-05 0.0041 17.5 3.1 3 23 176 196 174 196 0.97 3 19 3e-05 0.0029 17.9 1.7 1 23 202 224 202 224 0.98 4 19 4.2e-06 0.00042 20.6 3.5 1 23 230 252 230 252 0.97 5 19 0.0003 0.029 14.8 2.3 1 23 258 280 258 280 0.98 6 19 0.00022 0.022 15.2 0.1 1 23 286 308 286 308 0.96 7 19 0.0089 0.88 10.1 2.3 1 23 314 336 314 336 0.97 8 19 0.00096 0.095 13.2 5.1 1 23 342 364 342 364 0.98 9 19 0.00031 0.03 14.7 0.6 1 23 370 392 370 392 0.98 10 19 0.0057 0.56 10.7 0.3 1 21 674 694 674 695 0.94 11 19 5.4e-05 0.0052 17.1 1.5 1 23 698 720 698 720 0.98 12 19 0.00074 0.073 13.5 0.1 1 23 726 748 726 748 0.99 13 19 0.00047 0.046 14.1 1.7 1 23 754 776 754 776 0.98 14 19 9.4e-05 0.0092 16.4 1.4 1 23 782 804 782 804 0.97 15 19 2.6e-05 0.0025 18.1 0.4 1 23 810 832 810 832 0.98 16 19 0.0001 0.01 16.2 1.4 1 23 838 860 838 860 0.98 17 19 0.00018 0.018 15.5 0.9 1 23 866 888 866 888 0.97 18 19 9.3e-05 0.0091 16.4 1.6 1 23 894 916 894 916 0.97 19 19 0.02 1.9 9.0 0.5 1 23 922 944 922 944 0.98
Sequence Information
- Coding Sequence
- ATGGAGGTTAATGATGTTCCTTGCGAGGAAAGGATTTTTAAAATTAAAAAAGAGGAATTTCAAATTGATGAAAATAATTGTCATCCAGAATCTTATTTATTTAAATCCATAGATTTTGTAAAGCAAGAAGAAAATAATTCAATGAGCGAGGAAATTACTATTGTACCTGAATTTATCAAAGAAGAACCTAAAAATACTGACGATGAAAATTATAAAATTTCAATTTCTACTGAAGAGCCCGACGCCGTAAAAACCGACACTACCTTTACATCAGAAAATTCAATAGCAAAACGTACAAGATCCAAGCGAACTCCAAAATCTTCTCCAAAAACCACAAACCCAAAAAATAAGACTAAAAAAGTAAATCCAAAAAGTATCACCTTAAAATCAAAGAAATTTGCAAAAAGCACTTTGCAAATTGACCCGGCGGAAGTTTACACATGTGAAGTATGTTCCGCGAAATTCCAGCGAAAAGGTAATTTCAATAAACACAAATTAGTCCATACCGGCGAAAAGCCTTATGGATGCGACTTATGCTCGTTGCGATTCAATCAAAACAGTTCTCTGAAGCGACACATGCACACGCACTCGGAGGAGAAGCCTTACGCTTGCAGTATGTGTCCCTGGAAATTCCGACTGAACCATCAGTTGCAATCTCACTTGAACACCCACATGGAAGAGAAGCGCTACACGTGCGATGTCTGTTCCAAAAAATTCCGGCAGAAACACAGCTTGAGAAGACATCTTGGTATCCACTTCAACGAAAGACCTTTTTCTTGCGACGTTTGTTTCAGGAGCTTTCGAGAAAAGACTCAAATGAAAATCCACAAGCGAATCCACTCCGGAGAGCAACCCTACGCTTGCGAAATTTGTCCTGCGAAGTTCCGCGTAAGGGGTCTGCTGAACAGACACAGACTAGCTCATGCTGAAGAAAAACCTTATGCTTGCAATTTTTGTCCCGCGACTTTTCACTTGAAGTCTCGGTACAAAACCCACATGCTTATTCATACAGGGGAAAAACCCTACCAATGTGACGTATGTTCCGTTCAGTTCCGGCATAAGTGTTCGTTGAATAAACACACTTTGATTCACACCGGAGAAAAACCTTACACTTGCCAGGTTTGCTTGAAGCAATTTCGCGAGAAAGGGACTCTGGATAAGCATATGGTTGTTCATATGGAAGAATCAAGATTGGGAAAAATGAACATGGAAGTTTTGCCATTTGAAACAGTGGTTATAAAAGTTGAAAAGAATGATGAGAAAAAAAGGGCATTAGAGAAAAGAAGACAACAGTCAATAAAGCGAACGTCAAAACTCTCAAGCGAGGAATTAGAAGAAAGAAAGAAGAAAAAAACGCTTTATATGAGAAATTACAGAGCCAAACAGTCAGAGGAAGCCAGAGCAGCTCGTTTGCAGCAAGTGCGTGATTCCATGGCTCAGATCCGAGCCTCTGAATCAAACCAAGCTAGGGAAGTCCGCTTGCAGCAAATGCGAAATTCTATGGCTGAAATCCGAGCCTCAGAATCAAAGAAAGCTAGAGCAGCTCGTTTGCAGCAAATGCGAAAGTCCATGGCTAAGATCCGAGCCTCTGAATCGGAGGAAGCTAGAGAAGTCCGCTTGCAGCAAATGCGACAACGAAATGTTGAAGATTGGCGAATAAATGAGGTTCTGGAAAATCCTTTAGACATTGGAAAAATAGAAGATGAACTTGAAGGAGATTCAGTGGTTATAGAAAATACTATTGATGTACCTGATGTCAAAGTTATTGACAGTGTAAATTTTACGTTTGAAGGATCAGGATCAGTTTTAAATGAGGAAAAAAGTGACGACGAGTTTAACGCGAATCTAGATTATCCGATAGATATTGAAGAAATCAAGATCGAAGAAACTGAAGATACAATAATTTATCCAAATATTACTGATGTATCAAAGACGACAAAAATCAAAAAAAATGCAGCAAATGATCTCCAAGAAGTTCCCACAGAAGAAACTCCAAAAAATGAATCCATGTGGAAAACATTCAAATGCGATAAATGCGCAATGGAATTTGTCAATGAAAGTTCTCTAGCAACTCACTCAAAAAAATACAAATTTAACTGTGACGTCTGTCCAAAGTGTTTTATATCAAGACAAGGATTGTGGTACCACCTAAAATCGCACTACGGCCCCAAACCATTTAAATGCGAAGTATGTCCGGCTGATTTTGAGTTGAAATCCGGATTGATAGAGCACTCACGAACTCACGCAGGAGACATGAGCTTCTCTTGTACCCTGTGTGCCTACAAAACTCGGTACAAAAGTTCCTTGAACAGACACGCTCGTGTTCATACCAGAGAGAAGCCTTTTGCGTGTGACCTCTGTTCCGCGACCTTCCGGGAACAAGGTCACTTGAAGAGACACAGTCGGATTCATACTGGAGAAAAGCGCTACACCTGTGATGTCTGTTCCGCCAAGTTCAGGGAGAAGAGCACCTTGAGGCAGCACATTATTATTCACACTGGGGAAAAACCCTACACTTGTTCTGTTTGTGCGGCTAACTTTAGGCAGCAGAATCATCTGGATAGACATATGGTCACCCACAATGGAGAAAAACCCTACACTTGTTCTGTTTGTGCGGCTAATTTTAGGCAGCAGAATCATCTGGATAGACATATGGTCATCCACAATGGAGAAAAACCCTACACTTGTTCTGTTTGTGCGACTAACTTTAGGCAGCAGAATCATCTGGATAGACATATGGTCATCCACAGTGGAGAAAAAAGTTATGCTTGTCAAATTTGTTCCTTGGAGTTCCATGGATTGAGTACGTTTGCGAACCACGTGCTAACTCACGATGAAAAGGAATGA
- Protein Sequence
- MEVNDVPCEERIFKIKKEEFQIDENNCHPESYLFKSIDFVKQEENNSMSEEITIVPEFIKEEPKNTDDENYKISISTEEPDAVKTDTTFTSENSIAKRTRSKRTPKSSPKTTNPKNKTKKVNPKSITLKSKKFAKSTLQIDPAEVYTCEVCSAKFQRKGNFNKHKLVHTGEKPYGCDLCSLRFNQNSSLKRHMHTHSEEKPYACSMCPWKFRLNHQLQSHLNTHMEEKRYTCDVCSKKFRQKHSLRRHLGIHFNERPFSCDVCFRSFREKTQMKIHKRIHSGEQPYACEICPAKFRVRGLLNRHRLAHAEEKPYACNFCPATFHLKSRYKTHMLIHTGEKPYQCDVCSVQFRHKCSLNKHTLIHTGEKPYTCQVCLKQFREKGTLDKHMVVHMEESRLGKMNMEVLPFETVVIKVEKNDEKKRALEKRRQQSIKRTSKLSSEELEERKKKKTLYMRNYRAKQSEEARAARLQQVRDSMAQIRASESNQAREVRLQQMRNSMAEIRASESKKARAARLQQMRKSMAKIRASESEEAREVRLQQMRQRNVEDWRINEVLENPLDIGKIEDELEGDSVVIENTIDVPDVKVIDSVNFTFEGSGSVLNEEKSDDEFNANLDYPIDIEEIKIEETEDTIIYPNITDVSKTTKIKKNAANDLQEVPTEETPKNESMWKTFKCDKCAMEFVNESSLATHSKKYKFNCDVCPKCFISRQGLWYHLKSHYGPKPFKCEVCPADFELKSGLIEHSRTHAGDMSFSCTLCAYKTRYKSSLNRHARVHTREKPFACDLCSATFREQGHLKRHSRIHTGEKRYTCDVCSAKFREKSTLRQHIIIHTGEKPYTCSVCAANFRQQNHLDRHMVTHNGEKPYTCSVCAANFRQQNHLDRHMVIHNGEKPYTCSVCATNFRQQNHLDRHMVIHSGEKSYACQICSLEFHGLSTFANHVLTHDEKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00379991; iTF_00382230; iTF_00382052;
- 90% Identity
- iTF_00379991;
- 80% Identity
- iTF_00379991;