Cfla009498.1
Basic Information
- Insect
- Cotesia flavipes
- Gene Symbol
- -
- Assembly
- None
- Location
- scaffold:4624-8487[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0026 0.25 11.8 0.0 3 23 611 631 609 631 0.96 2 17 0.3 30 5.3 0.3 1 19 637 655 637 658 0.90 3 17 1.7 1.7e+02 3.0 1.2 2 23 664 685 663 685 0.94 4 17 3.2e-05 0.0031 17.8 1.2 3 23 694 715 693 715 0.98 5 17 0.0026 0.26 11.8 2.1 1 23 722 745 722 745 0.95 6 17 6.4e-05 0.0063 16.9 0.7 1 23 751 774 751 774 0.94 7 17 0.11 11 6.6 1.3 2 23 782 802 782 802 0.96 8 17 7e-08 6.8e-06 26.2 2.8 2 23 808 829 807 829 0.97 9 17 6.3e-07 6.2e-05 23.2 0.8 1 23 835 857 835 857 0.99 10 17 0.0029 0.29 11.6 2.8 2 23 869 891 868 891 0.95 11 17 0.078 7.6 7.2 2.6 1 23 897 920 897 920 0.95 12 17 0.0021 0.21 12.1 3.1 2 23 942 964 941 964 0.95 13 17 0.0011 0.11 13.0 0.7 2 23 971 993 970 993 0.96 14 17 3.6e-05 0.0035 17.7 1.1 2 23 1001 1022 1000 1022 0.96 15 17 0.0032 0.31 11.5 2.7 1 23 1028 1051 1028 1051 0.96 16 17 2.2 2.2e+02 2.6 3.2 2 23 1058 1079 1057 1079 0.96 17 17 0.037 3.6 8.2 2.5 1 23 1085 1107 1085 1107 0.95
Sequence Information
- Coding Sequence
- ATGGCAACAGTAAAAAATGATAAATGTGTTAAAAATATAAATGACTTAAAAAAAGTGATCCCCAAAGTTAAATTTGTCGGAAGTGAAATAAATAATTCCAACGAAGTAAACAAAAGTTACAATTCTTTAGATGTAGATTCAAATGAAGATAAAATGTCATATGCAGAAAATACTAAAACTCAACTAAATAATTATTGTCGTACCTGTGCTGGATTAAAAATTCCATTAGTAGATATTTTTGGTGAAAAAGGAATTCAAATGAGGTTAAATCAGCAAATGAAACATTTAGAGCAAATTGATAAAGATGATTGCTTGTCAACACAAATATGTATGGACTGTATTTGTGATTTAAAAATGAGTTATAAGTTTTTCATGCAAATAAAAAAGGCTGAAGTTAAATTGAGATCAATTTTTATGTCTTTAAATTCAGTAAATACGTGTCAACAAGAAATGAAGCCCGATAAGTCGACATCAAAAATGTATCAAAAGCTAGACGAAATAATTGAGAATCCTACGATAGAAAATAAATCAGAATTTTCGAGAAAACAGTGCAGTGAAAATAGTTTGAATAAAGAATTTATATCTGACGATTCTATGCTCTCAGTAGGTAAATGTGATGATTTCAAATTTGATGTGGGAACGGATTCTAGTTCAAATATTTCACATGAAAATGCTGACGTTAGCAATGAAAAAGTAATTTTTTCTGAAAAAGTTAAACCATGTGAAAGAAGAGAAGAAAAATCCGAAATCTTAACATCTGAATCAAACTATCAATATGATTCAGAACTTCATAATTATAGTAAAATAGAAGCTAAAAGTATAAATCAATTGAATCTAGATATCTGTGAGCCTGAGTATAATTTAATTGTAAAAGAAAACTTAAAAGAAACGAACATTACAAAAACAAAAATTTCATCAGATGCAGTGGACAGTATAGACCCCCTGGTAAAAGAATTAAAACTTGATAAATTAGATACTATGGCTTGTAAAAAATCAGACAATCAGGGTATAATGTATGTTACTGTGAAAGGTTCTAAACCGAGTGAGATGCTTTTGGTTAAAGTTAAAAAAATGGATAAAGTTGACGACAAAAAAGGAGGAAATTGTCTTAATAAGAACAACACTGAAGCCAGAATTGCTGAAAAATTTTGTAGAACTTTATCATACAAAGATATATATAATAATCGAACGAAAGAAATAGAAAACCGCGGAGCAATAATTGAAGAACAAATCGAAGAATACAAGAAAAAACGTGAAAAATTACTTGGTGTTGTCAATTGCAGTAATAGTACATTTGATACTGATGATTCAATCAATTATATTAATGTAAAAAACTTAGCCGGAGAAAATAATTCTTTTATGAAGATTCAACGACTCACTCAAATAGAATATATCAGTGAAAATAAAAATAGTAACTTAATAGATAGTACAAAAAATAAAAGTTTACATTTCCGCTATGTTGATTCAAATAATAAACAAAATACTGAATTGATAGAAAACATCTCTGAATATTCGATGTCTATGGCCACTACTCAACAAAAAGCCGAAAAAAATAATTTTACAAAAGGATTATCAAAAAATGAAGTAATTATTTCAGTGGGAAAAGAAAACGTAGATAAACTTTCTCAAATTTTGGGTAGAAATAAAAAAAATCTACTGGAATTTCAAGAATATCTTAATCAAAGGAAAATTATAATTGAACGATTGAAAGATCAAGACGTAATAGATTTGTATGAAGATCTTAATGATGTAATAAACCAAAAAAAATTACCAGGTCTAACTATCGAAAATCTTTCTGTGAATCCTACTATCAAAATAAAACTATTAGATTGTGATTACTGTTTAGAAATTTTTTATTCTCAAGAAGATTTGGACGCACATCTTAAAGTTCATGATTTCAAAATTTTATTTTTTTGTGAAGATTGTGAATCTGAATTTTCAACTAATAAAGCTAAGCGGGCACATAGTATAACATGTATAAAAAAATTGATTTGTAAATATTGTAATTTTATACTGGAGTCAAGAGGAAAAAAACGCCAACATGAACAAAAGCACTGTGATGCTATTTATGGTCAATTATGTGACATATGTGGTGAAAAATTTAAACACCAAGGTACATTAGACCAACATATTAAAACCCAACACATGAACTGGGAAAAAATTTTTCAATGTCCTAAATGTCCTAAAAAATTTGCTTTCAAACAGAAATTAAGCTTTCATTTAAAATCAGTTCATACTTCTTTACGAGCTTATTTATGTGAAGACTGTGGAGCTGACTTTAAAAATCCAGCATCTCTTAGGCATCATCGTATTCGAAAACATCAGCCGTCAAGTAATAAACGTGAATGTCAAGTTTGTCATAAAGTCGTTCCATTTTATAGCTTATCAAAGCATATGTATACTCATAAAGCATACACAATCAAATGTCCGCATTGTGATAAAATGTTTAAGAATTCATCTACATTAAAGCAGCATCTACGTATTCATGAAGATCGACGACCATACCGTTGTGAACATTGTGGTGCCGGATTTAATCGACGAGATGGTTTAAGATTGCACATGAGGGTTCATTTGAAATCTAATAGTCGAGCTCTTAGGGAATGTTCTTGCCAGATATGTTCAGAGAAATTTCCTAATCATTCAATGCTTGTTATCCATCGAAATCGTGTTCATAAAGATGGCAAACAATATACTTGCCATATATGTAACCGTTCTATGCTTTCTTCCAGATCATTAGAATGGCATATGTCTCATATTCACAATCAAGTACCTCCGGGTATTTCTAGAGATCAAGCGGATCCTAATCTAGAAAAAAAAAGAGTATCATGCAATCATTGCAATAAAACATTCAAAACTGAAATGATTTTAAGAACTCATATAAAAAATACACATATGGAAAAGAATCCAGTCAAATGTTTAGACTGTGATTCAATGTTTACGTCAGAAGTAAGGCTGAAACACCATATGATGATTGCTCACAATCGATTTGAAGGTACACTCATTTGTCCTCATTGTCCTAAACGTTTTGTCAATCAGTTAAGACTCAAAACTCATATGATATCACATTCAGAAGATAGACCATATACATGTGAACTTTGCGGTTTTAATTTAAAAACCAAAATTCAATTAATAAAACATCACCAAAATAAACATAGTGATGAGAGGCCGCTTCAATGCCGATACTGTGCTTGGAGATGCAAGCAAGTTAGTGCATTGGTTTGTCATGAAAGAACACATACGAATGAACGACCATACTCTTGTATTGTTTGTAAACAACGCTTCAAATATCTTGGAGATAAAAATAAACACCAAAGAAGGCATGAGAGCCTTGGTGGTTCAGGATTTAAACGAATTGTAGCCGGAAGAAATCTTAAACAATCCAAAAATCACGAAGTCGAAAATTCATCTTCTGATCAAGAACAGTTGGAACTAGAAGGTGAATATGAAACAATTGTCGAAGGTGAGCAACAATTCGAGGAGCAAGTTGAACATGAAACGATGTATGAAGATGATCATGAAACTATCAAATTTGAAACTGTAGAAGTTAATGCAAACTATGAACAGGAATATGATGAAACTTCCGGAGAAGTTTCTGATTCTGCTCAAGTAATCATGAGCATCGAAGATACGCCAGTCTATACTGAAGAGGTCACTGCTGATAATATTGAACATATGGGCATAATAGCTGATGATATTACTAATCACATATTACAACCTGGAGCAATAGTTCAGATACGGCAACAAGATGAAAATGGTAAAATTCAAGTTATACCTGTTATGCTAGCTTTACCTGAGTTGAATGAATCAGGTACTGAAGTGAGTTTAACAACGGCATCAATAATTTATGATGATGAAAACAATTGA
- Protein Sequence
- MATVKNDKCVKNINDLKKVIPKVKFVGSEINNSNEVNKSYNSLDVDSNEDKMSYAENTKTQLNNYCRTCAGLKIPLVDIFGEKGIQMRLNQQMKHLEQIDKDDCLSTQICMDCICDLKMSYKFFMQIKKAEVKLRSIFMSLNSVNTCQQEMKPDKSTSKMYQKLDEIIENPTIENKSEFSRKQCSENSLNKEFISDDSMLSVGKCDDFKFDVGTDSSSNISHENADVSNEKVIFSEKVKPCERREEKSEILTSESNYQYDSELHNYSKIEAKSINQLNLDICEPEYNLIVKENLKETNITKTKISSDAVDSIDPLVKELKLDKLDTMACKKSDNQGIMYVTVKGSKPSEMLLVKVKKMDKVDDKKGGNCLNKNNTEARIAEKFCRTLSYKDIYNNRTKEIENRGAIIEEQIEEYKKKREKLLGVVNCSNSTFDTDDSINYINVKNLAGENNSFMKIQRLTQIEYISENKNSNLIDSTKNKSLHFRYVDSNNKQNTELIENISEYSMSMATTQQKAEKNNFTKGLSKNEVIISVGKENVDKLSQILGRNKKNLLEFQEYLNQRKIIIERLKDQDVIDLYEDLNDVINQKKLPGLTIENLSVNPTIKIKLLDCDYCLEIFYSQEDLDAHLKVHDFKILFFCEDCESEFSTNKAKRAHSITCIKKLICKYCNFILESRGKKRQHEQKHCDAIYGQLCDICGEKFKHQGTLDQHIKTQHMNWEKIFQCPKCPKKFAFKQKLSFHLKSVHTSLRAYLCEDCGADFKNPASLRHHRIRKHQPSSNKRECQVCHKVVPFYSLSKHMYTHKAYTIKCPHCDKMFKNSSTLKQHLRIHEDRRPYRCEHCGAGFNRRDGLRLHMRVHLKSNSRALRECSCQICSEKFPNHSMLVIHRNRVHKDGKQYTCHICNRSMLSSRSLEWHMSHIHNQVPPGISRDQADPNLEKKRVSCNHCNKTFKTEMILRTHIKNTHMEKNPVKCLDCDSMFTSEVRLKHHMMIAHNRFEGTLICPHCPKRFVNQLRLKTHMISHSEDRPYTCELCGFNLKTKIQLIKHHQNKHSDERPLQCRYCAWRCKQVSALVCHERTHTNERPYSCIVCKQRFKYLGDKNKHQRRHESLGGSGFKRIVAGRNLKQSKNHEVENSSSDQEQLELEGEYETIVEGEQQFEEQVEHETMYEDDHETIKFETVEVNANYEQEYDETSGEVSDSAQVIMSIEDTPVYTEEVTADNIEHMGIIADDITNHILQPGAIVQIRQQDENGKIQVIPVMLALPELNESGTEVSLTTASIIYDDENN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00382073; iTF_00378227; iTF_00381312; iTF_00380557; iTF_00379095;
- 90% Identity
- iTF_00379095;
- 80% Identity
- -