Cchi013671.1
Basic Information
- Insect
- Cotesia chilonis
- Gene Symbol
- -
- Assembly
- None
- Location
- scaffold231:20393-24668[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0028 0.22 11.7 0.0 3 23 721 741 719 741 0.96 2 17 0.33 26 5.2 0.3 1 19 747 765 747 768 0.90 3 17 0.65 50 4.3 1.2 2 23 774 795 773 795 0.95 4 17 3.4e-05 0.0027 17.8 1.2 3 23 804 825 803 825 0.98 5 17 0.0028 0.22 11.7 2.1 1 23 832 855 832 855 0.95 6 17 7e-05 0.0054 16.8 0.7 1 23 861 884 861 884 0.94 7 17 0.12 9.6 6.6 1.3 2 23 892 912 892 912 0.96 8 17 7.5e-08 5.9e-06 26.1 2.8 2 23 918 939 917 939 0.97 9 17 6.8e-07 5.3e-05 23.1 0.8 1 23 945 967 945 967 0.99 10 17 0.0032 0.25 11.6 2.8 2 23 979 1001 978 1001 0.95 11 17 0.084 6.6 7.1 2.6 1 23 1007 1030 1007 1030 0.95 12 17 0.0023 0.18 12.0 3.1 2 23 1052 1074 1051 1074 0.95 13 17 0.0012 0.095 12.9 0.7 2 23 1081 1103 1080 1103 0.96 14 17 3.9e-05 0.003 17.6 1.1 2 23 1111 1132 1110 1132 0.96 15 17 0.0035 0.27 11.4 2.7 1 23 1138 1161 1138 1161 0.96 16 17 2.4 1.9e+02 2.5 3.2 2 23 1168 1189 1167 1189 0.96 17 17 0.04 3.1 8.1 2.5 1 23 1195 1217 1195 1217 0.95
Sequence Information
- Coding Sequence
- ATGAAGGACTCAGCTTACGTATCAGATTCCAATGTTGACTCAACACATATTTCAAATCGTAATCATAATGAAAGAATTATTAACTCCGATAGAAATTACAGAGTTACTGGAACTAACGAAGAATCTAGCTCGAATTTTCTGCTATCGTCACATGACAAAAATTCTATAGGTGGAAACAATTGTTTTATAAAATCAAATACAACAGGAGATCGAAAAAACGTTGATAGTAATAATATGTTAAGGAATGTCAAAGTGAATATAGTATGCAATGAAAAAGAATTCAAAAATATTTCTTCATTAGATAGCTTAGGGATTTTAACATCGAAAAATATGGCAACAGTAAAAAATGATAAATGTGTTAAAAATATAAATGACTTAAAAAAAGTGATCCCCAAAGTTAAATTTGTCGGAAGTGAAATAAATAATTCCAACGAAGTAAACAAAAGTTACAATTCTTTAGATGTAGATTCAAATGAAGATAAAATGTCACATGCAGAAAATACTAAAACTCAACTAAATAATTATTGTCGTACCTGTGCTGGATTAAAAATTCCATTAGTAGATATTTTTGGTGAAAAAGGAATTCAAATGAGGTTAAATCAGCAAATGAAACATTTAGAGCAAATTGATAAAGATGATAGCTTGCCAACACAAATATGTATGGACTGTATTTGTGATTTAAAAATGAGTTATAAGTTTTTCATGCAAATAAAAAAGGCTGAAGTTAAATTGAGATCAATTTTTATGTCTTTAAATTCAGTAAATACGCGTCAACAAGAAATGAAGCCCGATAAGTCGACATCAAAAATGTATCAAAAGCTAGACGAAATAATTGAGAATCCTACGATAGAAAATAAATCAGAATTTTCGAGAAAACAGTGCAGTGAAAATAGTTTGAATAAAGAATTTATATCTGACGATTCTATGCTCTCAGTAGGTAAATGTGATGATTTCAAATTTGATGTGGGAACGGATTCTAGTTCAAATATTTCACATGAAAATGCTGACGTTAGCAATGAAAAAGTAATTTTTTCTGAAAAAGTTCAACCATGTGAAAGAAGAGAAGAAAAATCCGAAATCTTAACATCTGAATCAAACTATCAATATGATTCAGAACTTCATAATTATAGTAAAATAGAAGCTAAAAGTATAAATCAATTGAATCTAGATATCTGTGAGCCTGAGTCTAATTTAATTATAAAAGAAAACTTAAAAGAAACGAACATTACAAAAACAAAAATTTCATCAGATGCAGTGGACAGTATAGACTCCCTGGTAAAAGAATCAAAACTTGATAAATTAGATACTATGGCTTGTAAAAAATCAGACAATCAAGGTATAATGTATGTTACTGTGAAAGGTTCTAAACCGAGTGAGATGCTTTTGGTTAAAGTTAAAAAAATGGATAAAGTTGACGACAAAAAAGGAGGAAATTGTCTTAATAAGAACAACACTGAAGCCAGAATTGCTGAAAAATTTTGTAGAACTTTATCATACAAAGATATATATAATAATCGTACGAAAGAAATAGAAAACCGCGGAGCAATAATTGAAGAACAAATCGAAGAATACAAAAAAAAACGTGAAAAATTACTTGGTGTTGTCAATTGCAGTAATAGTACATTTGATACTGATGATTCAATCAATTATATTAATGTAAAAAACTTAGCCGGAGAAAATAATTCTTTTATGAAGATTCAACGACTCACTCAAATAGAATATATCAGTGAAAATAAAAATAGTAACTTAATAGATAGTACAAAAAATAAAAGTTTACATTTCCGCTATGTTGATTCAAATAATAAACAAAATACTGAATTGATAGAAAACATCTCTGAATATTCGATGTCTATGGCCACTACTCAACAAAAAGCCGAAAAAAATAATTTTACAAAAGGATTATCAAAAAATGAAGTAATTATTTCAGTGGGAAAAGGAAACGTAGATAAACTTTCTCAAATTTTGGGTAGAAATAAAAAAAATCTACTGGAATTTCAAGAATATCTTAATCAAAGGAAAATTATAATTGAACGATTGAAAGATCAAGACGTAATAGATTTGTATGAAGATCTTAATGATGTAATAAACCAAAAAAAATTACCAGGTCTAACTATCGAAAATCTTTCTGTGAATCCTACTATCAAAATAAAACTATTAGATTGTGATTACTGTTTAGAAATTTTTTATTCTCAAGAAGATTTGGACGCACATCTTAAAGTTCATGATTTCAAAATTTTATTTTTTTGTGAAGATTGTGAATCTGAATTTTCAACTAATAAAGCTAAGCGGGCACATAGTATAACATGTATAAAAAAATTGATTTGTAAATATTGTAATTTTGTACTGGAGTCAAGAGGAAAAAAACGCCAACATGAACAAAAGCACTGTGATGCTATTTATGGTCAATTATGTGACATATGTGGTGAAAAATTTAAACACCAAGGTACATTAGACCAACATATTAAAACCCAACACATGAACTGGGAAAAAATTTTTCAATGTCCTAAATGTCCTAAAAAATTTGCTTTCAAACAGAAATTAAGCTTTCATTTAAAATCAGTTCATACTTCTTTACGAGCTTATTTATGTGAAGACTGTGGAGCTGACTTTAAAAATCCAGCATCTCTTAGGCATCATCGTATTCGAAAACATCAGCCGTCAAGTAATAAACGTGAATGTCAAGTTTGTCATAAAGTCGTTCCATTTTATAGCTTATCAAAGCATATGTACACTCATAAAGCATACACAATCAAATGTCCGCATTGTGATAAAATGTTTAAGAATTCATCTACATTAAAGCAGCATCTACGTATTCATGAAGATCGACGACCATACCGTTGTGAACATTGTGGTGCCGGATTTAATCGACGAGATGGTTTAAGATTGCACATGAGGGTTCATTTGAAATCTAATAGCCGAGCTCTTAGGGAATGTTCTTGCCAGATATGTTCAGAGAAATTTCCTAATCATTCAATGCTTGTTATCCATCGAAATCGTGTTCATAAAGATGGCAAACAATATACTTGCCATATATGTAACCGTTCTATGCTTTCTTCCAGATCATTAGAATGGCATATGTCTCACATTCACAATCAAGTACCTCCGGGTATTTCTAGAGATCAAGCGGATCCTAATCTAGAAAAAAAAAGAGTATCATGCAATCATTGCAATAAAACATTCAAAACTGAAATGATTTTAAGAACTCATATCAAAAATACACATATGGAAAAGAATCCAGTCAAATGTTTAGACTGTGATTCAATGTTTACGTCAGAAGTAAGGCTGAAACACCATATGATGATTGCTCACAATCGATTTGAAGGTACACTCATTTGTCCTCATTGTCCTAAACGTTTTGTCAATCAGTTAAGACTCAAAACTCATATGATATCACATTCAGAAGATAGACCATATACATGTGAACTTTGCGGTTTTAATTTAAAAACCAAAATTCAATTAATAAAACATCACCAAAATAAACATAGTGATGAGAGGCCGCTTCAATGCCGATACTGTGCTTGGAGATGCAAGCAAGTTAGTGCATTGGTTTGTCATGAAAGAACACATACGAATGAACGACCATACTCTTGTATTGTTTGTAAACAACGCTTCAAATATCTTGGAGATAAAAATAAACACCAAAGAAGGCATGAGAGCCTTGGTGGTTCAGGATTTAAACGAATTGTAGCCGGAAGAAATCTTAAACAATCCAAAAATCACGAAGTCGAAAATTCATCTTCTGATCAAGAACAGTTGGAACTAGAAGAAGTTAATGAAAACTATGAACAGGAATATGATGAAACTTCCGGAGAAGTTTCTGATTCTGCTCAAGTAATCATGAGCATTGAAGATACGCCAGTCTATACTGAAGAGGTCACTGCTGATAATATTGAACATATAGGCATAATAGCTGATGATATTACTAATCACATATTACAACCTGGAGCAATAGTTCAGATACGGCAACAAGATGAAAATGGTAAAATTCAAGTTATACCTGTTATGCTAGCTTTACCTGAGTTGAATGAATCAGGTACTGAAGTGAGTTTAACAACTGCATCAATAATTTATGATGATGAAAACAATTGA
- Protein Sequence
- MKDSAYVSDSNVDSTHISNRNHNERIINSDRNYRVTGTNEESSSNFLLSSHDKNSIGGNNCFIKSNTTGDRKNVDSNNMLRNVKVNIVCNEKEFKNISSLDSLGILTSKNMATVKNDKCVKNINDLKKVIPKVKFVGSEINNSNEVNKSYNSLDVDSNEDKMSHAENTKTQLNNYCRTCAGLKIPLVDIFGEKGIQMRLNQQMKHLEQIDKDDSLPTQICMDCICDLKMSYKFFMQIKKAEVKLRSIFMSLNSVNTRQQEMKPDKSTSKMYQKLDEIIENPTIENKSEFSRKQCSENSLNKEFISDDSMLSVGKCDDFKFDVGTDSSSNISHENADVSNEKVIFSEKVQPCERREEKSEILTSESNYQYDSELHNYSKIEAKSINQLNLDICEPESNLIIKENLKETNITKTKISSDAVDSIDSLVKESKLDKLDTMACKKSDNQGIMYVTVKGSKPSEMLLVKVKKMDKVDDKKGGNCLNKNNTEARIAEKFCRTLSYKDIYNNRTKEIENRGAIIEEQIEEYKKKREKLLGVVNCSNSTFDTDDSINYINVKNLAGENNSFMKIQRLTQIEYISENKNSNLIDSTKNKSLHFRYVDSNNKQNTELIENISEYSMSMATTQQKAEKNNFTKGLSKNEVIISVGKGNVDKLSQILGRNKKNLLEFQEYLNQRKIIIERLKDQDVIDLYEDLNDVINQKKLPGLTIENLSVNPTIKIKLLDCDYCLEIFYSQEDLDAHLKVHDFKILFFCEDCESEFSTNKAKRAHSITCIKKLICKYCNFVLESRGKKRQHEQKHCDAIYGQLCDICGEKFKHQGTLDQHIKTQHMNWEKIFQCPKCPKKFAFKQKLSFHLKSVHTSLRAYLCEDCGADFKNPASLRHHRIRKHQPSSNKRECQVCHKVVPFYSLSKHMYTHKAYTIKCPHCDKMFKNSSTLKQHLRIHEDRRPYRCEHCGAGFNRRDGLRLHMRVHLKSNSRALRECSCQICSEKFPNHSMLVIHRNRVHKDGKQYTCHICNRSMLSSRSLEWHMSHIHNQVPPGISRDQADPNLEKKRVSCNHCNKTFKTEMILRTHIKNTHMEKNPVKCLDCDSMFTSEVRLKHHMMIAHNRFEGTLICPHCPKRFVNQLRLKTHMISHSEDRPYTCELCGFNLKTKIQLIKHHQNKHSDERPLQCRYCAWRCKQVSALVCHERTHTNERPYSCIVCKQRFKYLGDKNKHQRRHESLGGSGFKRIVAGRNLKQSKNHEVENSSSDQEQLELEEVNENYEQEYDETSGEVSDSAQVIMSIEDTPVYTEEVTADNIEHIGIIADDITNHILQPGAIVQIRQQDENGKIQVIPVMLALPELNESGTEVSLTTASIIYDDENN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00379826;
- 90% Identity
- iTF_00379095;
- 80% Identity
- -