Basic Information

Gene Symbol
ZFX
Assembly
None
Location
contig:10262531-10266958[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 1.4 1.7e+02 3.7 0.1 3 23 15 35 14 35 0.94
2 15 3.7 4.4e+02 2.3 2.3 1 23 945 968 945 968 0.80
3 15 0.0053 0.63 11.3 0.8 2 23 1055 1077 1054 1077 0.95
4 15 0.0016 0.19 13.0 0.1 2 23 1090 1111 1089 1111 0.97
5 15 1.7e-05 0.0021 19.1 3.1 2 23 1114 1135 1113 1135 0.97
6 15 0.0078 0.93 10.8 0.3 1 23 1141 1163 1141 1163 0.95
7 15 2.8e-05 0.0033 18.5 4.5 2 23 1170 1191 1169 1192 0.95
8 15 0.12 15 7.0 3.7 5 23 1205 1223 1204 1223 0.97
9 15 2.5e-05 0.003 18.6 1.5 3 23 1230 1251 1229 1251 0.97
10 15 0.014 1.7 10.0 0.5 2 23 1267 1287 1266 1287 0.97
11 15 7.6e-05 0.0091 17.1 0.7 1 20 1293 1312 1293 1315 0.92
12 15 9.5e-05 0.011 16.8 2.7 1 23 1323 1345 1323 1345 0.99
13 15 0.0026 0.31 12.2 3.2 1 23 1351 1373 1351 1373 0.97
14 15 4.8e-06 0.00057 20.9 3.9 1 23 1379 1401 1379 1401 0.99
15 15 0.00034 0.041 15.0 7.2 1 23 1407 1429 1407 1430 0.96

Sequence Information

Coding Sequence
ATGGAACTCGGCGTTACGACAGATATCGGAGGGGCGGTCGCATGTCCTGTGTGTACATTATATCTCAGAGAAGGTATAAGTCTTCAGAGGCACTTGGACACCCATCCAAAGGAACAAGTGATAGAGGCACTGATAAAAGCCAGTGGCTCGTCGTCAAGTTTGTCGTCTCTTCAGTTACCTCAAACCCAAGTGCCTCAGGTACCGCAAACCCTTCAGCCGTCACCGCCACAACAGCAGGTCAATGCCCAAAGCTCAACTTCAGCACCAACAGCAGCAGCTGTTGCTGCTGCTCACATTCCTACGCAGGCCCCGTTTCCTATTGGTCCTGTCTTTGAGTGTCCACCGATCAATGCAATGATGCCACCGCAATTTGCCTCTTTTAACTATCAACAATTTGTCAACAATGGTACTATGATGATTCCACAGTACGCGATGGCACCACCTCAGGCCAATCAGATGATGCAGATGCTTTACAATCCGTACAGCATGTATCAACAGCAACAGGTACCGACTGTTCAGATGATTTCACCGGTATCAGCACTCCCGACGACTCGTATCAGGCCGGTAGTTACTGTAGCTAATGCTGAAACTAATAGAAATGTTATTATTTCAACTAGTACTAATGAACATAAACAAATAATTCCAGAGATTATTTCAGAGGCAAATATGGAAAGGATTTTACCAGACATGGAGAGTTGTGAAACTTCAACTCAACAGTCAACAGATATACGACATGATAATAATTGTAATGATAATGATAATAATAATATTTCTGTTAGACAATTGGATCATCGAGATCAACAGACCCAGAGTAATTCACCAAGGCCGGTTATAAATAACAGTGAAATTGTGAGAAATGACACTGTCTCAGTGGTCTGTGAATCACCAGCTTCTGAAGAAGATAAGTCCGAGAGTATTCTTCCAGATATGGAGGAACCTGAGCTCGATATTGATGCTGATATTCAATGTAGAAATGAGCAACAACAACAACAACAACGACAACATCATAATCAAGATCGACATCAGAGATTTTCATCTACATACAATAGTCAAGCTGACAATGAAAATAGTAATACTGATACGCGATTAAATCACCTTACAGAAGATCAAGATAAATTGGAGTCTCAGGAATCATTGAGCTCAGAAAAATTGAAGTCATCAGAGTCTATTGAATTACAAGTTAATTCAGCTCCAACTCCAATAATTATAGATACTTGTCAGAAAAATGAAGAAGATCATCTGGAACATCTTCTTATTACAATGATTGAGTCAGGTTTTGTCGAGACGCATGAAAAAACAAATGATGATGATGATGAGCCCATTCAAGAATCTAACCTAAAAATAATTAAAACTGCACAGCAAAATGAAGAACAAATGGAAGAAGAATCTGAAAATCATCTTACTCCTGAAGACATTAAGTATATTAATAACACCGAAGCTTGCGTAGAAACAGAAAAGTGCATTGACACAAGTATTATTGACGAGTGCGACTTTGACTATGCATATCGGTATAAACATAGTTTATCAGCGCCTGCGTCTCCAGTATCAGCGTCAAAAAAAATATCACATTCTTATTCAACGAGATCTGAATGTGGTTCTAATGAAAATCTTAATTTTTATCCAGCTGGTTTTGACGCATCTACATTGCAAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGGAGATTGAAGAAATAGCTAGTCCCCATACACCATTTGCCAAACAAAATGATGATGATTTAGATAATGTACGTTCTCATACGCCATTATCCGCTATCAGTGGTATCTCTGGTCTTCGAGTACGCAGAGATCTCAGCAAGCCGTCATCCCCTGTATCAATCCGGTCATTTGGTCAAATGGAAGCTGACAGTCATGATGAAGAGACCAACGACTCTGTTATAAGTCAACATAAAAATTCAGCTAATTGCTTACAAGTCGACAACAACGCAGCAGTAAGATTAAATCGTGATGAATCTCAAGGTGCCGGCATTGAAACTGCAAGGAAATCCGAGAATAATAGTAATGGCATCTTTCATCAGTCGGTCATTACGGAGCACGTTAGCTCATTTCCAGCAATTCACTCGCAACAATCAATCACCAATGAAAATTATACGATATGTAGTAATAAAATTACAACGCATCAATCAAATTTAACTTGTGGTTTGTCGCAAGCAACTGACCCTACGACAAGTATTGAATCTAAGAGTTTCCAGTCAACAATAACTAAAACAGTAAATCACATACCAACGACCGAGCTTCTTAATATCAATGAAGATGCACATTCAGGTCCTATGAATGTATTTGAATTTGATGGACTTCAAATTCTCGTTCCTAGTACATTTATAAGTGAATCATCACAGAAAGCAATTAGCGCAACGAGTCAACAATCAATGGCAAGCAGTGAAGGTGGTACGGGTATCGATGAAGAAGTAAAGAGTGTCAACATGCGGGCAGACGAGACAATGCCACCAAGGGGAGAGCTGTCTGAACAGGAAAGCAACGGCTGCACAGAACATTCGGCTTGGCAGCTGTATGTTGGTCAAGAGTCTTCCCGTATGTCGACATCGTACGATTTGATGGCACGTGAAAGCTGGGAAGAGTCAGAAGGATCTGATAATGAAGCCGGGGTTCCACTGTTAGACAGTCGTTCGCTCGCTACCCACTTTACTTCAAGCTTATTTCTTGATCGAGACAGAAAAACACCGACAAAACAACGTACATTCAAGTGCTCACAGTGTACAGAGGTTTTTGACTGCCCGAAAGAACGTCGTGTTCACAGTACAACAGTACACAAAGAAGCTGGTCCAAGTAACAGTTGCAGTAACAGTGGTATTAACGAACAGTCTGAAACAAAAGACATAAAACTTCTCGATGGCCCCATGAATCCTTTTGAGGATATATTTGTTCCTGGTCTACATGTTCAACAGGCCTATCAACAGCAACAGCCGTTGCTACATCAAATGCAACCACCACAACAATTAACAGACATAAGCAAAGTTGAAGGGGATGAAAAATCTGAAAGTCTAGCTTTAACACAAGGTATAGAAATTTCCTGTGCTATGTGTACTCAACGTTTTAGTTCTGAACGAAGTTTACAGATGCACAATAGAAGGGTTCATGGTACAGAGGTTGCACGACGTCTTCATGATATTTCAAAGTGTCAAATATGCAACGAAGAATTTCCCTCAGTCGCTTTATTTAACGCTCATTTAAAAATTCATCCGCTGGAGTGTTCACAGTGTGGTAAATATTTCTATCGTAAACAAAATTTCAAATTACATATGAAACGTCATCTTGGTATAAAACCATTTCCATGTACTATTTGCGATAAAGCATTTTTAACAAAACAAAAATTAGATGAACATACGAATGGGCATACAGGTAATGCACCAGTTAAATGCAACCTCTGTAATGAAACATTCCGTAGATACTCAAATTTAACTCAACATAAAAATCGTCATCATTTAAATATAAAACGTAAGTTGAAAGATTATATATGTCACTGTGGTGAAGTATTTCATACTAAAAAGAAGCTTGCTTGGCACAAGGAAACACACGATGAGAAACCTAAAGCGTGTACCTATTGTAATGAAAGATTTATACACATGGCTAGTTTAACACGTCACATGAGACGTGCTCATAATCGTCGTTTTGTACCAGATGCTCAACGGGAAAATGAAAATGTCGAGTGTCCAATATGTAAGTGCATATATCTACGTTCATCACTGTCAGTTCATATGCGTGTACACAATGGTGAACGTCCCTACGAGTGTCAGGTGTGTTCAAAAGCATTCAGTACCAAGTGGAATTTACAATTACATAAATGGACTCATGCAGCACGTAGCACCAAACCCTTTAAGTGCAATCAGTGTAGCGCTGCGTTTTATCGTCACAGTGACTACACGGCACATATGAATTCTCACAGAAATGTCAGGCCATATACGTGTAATTATTGTGGCGCTCAATTTATAAGAAAATACAATTGTTTAAGACATGTTAAAGAACATGAAGAAAATAAAGCATACACGTGCGATGTATGCAATAAAACTTTCCACCGATCATACTATCTTAAAGAGCATTTACGTGTTCATAGTGGTGCACGACCATATACGTGTCACATATGCGGCAAATCAAGCAGTACCAAGTCTAATCACAATAAGCATGTAAGAATTCATCATGCTCGTGAGCCTGTAAATACCGAAAATTGA
Protein Sequence
MELGVTTDIGGAVACPVCTLYLREGISLQRHLDTHPKEQVIEALIKASGSSSSLSSLQLPQTQVPQVPQTLQPSPPQQQVNAQSSTSAPTAAAVAAAHIPTQAPFPIGPVFECPPINAMMPPQFASFNYQQFVNNGTMMIPQYAMAPPQANQMMQMLYNPYSMYQQQQVPTVQMISPVSALPTTRIRPVVTVANAETNRNVIISTSTNEHKQIIPEIISEANMERILPDMESCETSTQQSTDIRHDNNCNDNDNNNISVRQLDHRDQQTQSNSPRPVINNSEIVRNDTVSVVCESPASEEDKSESILPDMEEPELDIDADIQCRNEQQQQQQRQHHNQDRHQRFSSTYNSQADNENSNTDTRLNHLTEDQDKLESQESLSSEKLKSSESIELQVNSAPTPIIIDTCQKNEEDHLEHLLITMIESGFVETHEKTNDDDDEPIQESNLKIIKTAQQNEEQMEEESENHLTPEDIKYINNTEACVETEKCIDTSIIDECDFDYAYRYKHSLSAPASPVSASKKISHSYSTRSECGSNENLNFYPAGFDASTLQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMEIEEIASPHTPFAKQNDDDLDNVRSHTPLSAISGISGLRVRRDLSKPSSPVSIRSFGQMEADSHDEETNDSVISQHKNSANCLQVDNNAAVRLNRDESQGAGIETARKSENNSNGIFHQSVITEHVSSFPAIHSQQSITNENYTICSNKITTHQSNLTCGLSQATDPTTSIESKSFQSTITKTVNHIPTTELLNINEDAHSGPMNVFEFDGLQILVPSTFISESSQKAISATSQQSMASSEGGTGIDEEVKSVNMRADETMPPRGELSEQESNGCTEHSAWQLYVGQESSRMSTSYDLMARESWEESEGSDNEAGVPLLDSRSLATHFTSSLFLDRDRKTPTKQRTFKCSQCTEVFDCPKERRVHSTTVHKEAGPSNSCSNSGINEQSETKDIKLLDGPMNPFEDIFVPGLHVQQAYQQQQPLLHQMQPPQQLTDISKVEGDEKSESLALTQGIEISCAMCTQRFSSERSLQMHNRRVHGTEVARRLHDISKCQICNEEFPSVALFNAHLKIHPLECSQCGKYFYRKQNFKLHMKRHLGIKPFPCTICDKAFLTKQKLDEHTNGHTGNAPVKCNLCNETFRRYSNLTQHKNRHHLNIKRKLKDYICHCGEVFHTKKKLAWHKETHDEKPKACTYCNERFIHMASLTRHMRRAHNRRFVPDAQRENENVECPICKCIYLRSSLSVHMRVHNGERPYECQVCSKAFSTKWNLQLHKWTHAARSTKPFKCNQCSAAFYRHSDYTAHMNSHRNVRPYTCNYCGAQFIRKYNCLRHVKEHEENKAYTCDVCNKTFHRSYYLKEHLRVHSGARPYTCHICGKSSSTKSNHNKHVRIHHAREPVNTEN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2