Cglo004143.1
Basic Information
- Insect
- Cotesia glomerata
- Gene Symbol
- ZFX
- Assembly
- None
- Location
- Contig20500:42827-47555[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.2 1.3e+02 3.7 0.1 3 23 15 35 14 35 0.94 2 15 3.2 3.5e+02 2.3 2.3 1 23 943 966 943 966 0.80 3 15 0.0046 0.49 11.3 0.8 2 23 1053 1075 1052 1075 0.95 4 15 0.0014 0.15 13.0 0.1 2 23 1088 1109 1087 1109 0.97 5 15 1.5e-05 0.0016 19.1 3.1 2 23 1112 1133 1111 1133 0.97 6 15 0.0068 0.73 10.8 0.3 1 23 1139 1161 1139 1161 0.95 7 15 2.4e-05 0.0026 18.5 4.5 2 23 1168 1189 1167 1190 0.95 8 15 0.11 12 7.0 3.7 5 23 1203 1221 1202 1221 0.97 9 15 2.2e-05 0.0024 18.6 1.5 3 23 1228 1249 1227 1249 0.97 10 15 0.012 1.3 10.0 0.5 2 23 1265 1285 1264 1285 0.97 11 15 6.6e-05 0.0071 17.1 0.7 1 20 1291 1310 1291 1313 0.92 12 15 8.2e-05 0.0089 16.8 2.7 1 23 1321 1343 1321 1343 0.99 13 15 0.0023 0.25 12.2 3.2 1 23 1349 1371 1349 1371 0.97 14 15 4.2e-06 0.00045 20.9 3.9 1 23 1377 1399 1377 1399 0.99 15 15 0.0003 0.032 15.0 7.2 1 23 1405 1427 1405 1428 0.96
Sequence Information
- Coding Sequence
- ATGGAACTCGGCGTCACGACAGATATCGGAGGGGCGGTCGCATGTCCTGTGTGTACATTATATCTCAGAGAAGGTATAAGTCTTCAGAGGCACTTGGACACCCATCCAAAGGAACAAGTGATAGAGGCACTGATAAAAGCTAGTGGCTCGTCGTCAAGTTTGTCGTCTCTTCAGTTACCTCAAACCCAAGTGCCTCAGGTACCGCAAACCCTTCAGCCGTCACCGCCACAACAGCAGGTCAATGCCCAAAGCTCAACTTCAGCACCAACAGCAGCAGCTGTTGCTGCTGCTCACATTCCTACGCAGGCCCCGTTTCCTATTGGTCCTGTCTTTGAGTGTCCACCGATCAATGCAATGATGCCACCGCAATTTGCCTCTTTTAACTATCAACAATTTGTCAACAATGGTACTATGATGATTCCACAGTACGCGATGGCACCACCTCAGGCCAATCAGATGATGCAGATGCTTTACAATCCGTACAGCATGTATCAACAGCAACAGGTACCGACTGTTCAGATGATTTCACCGGTATCAGCACTCCCGACGACTCGTATCAGACCGGTAGTTACTGTAGCTAATGCTGAAACTAATAGAAATGTTATTATTTCAACTAGTACTAATGAACATAAACAAATAATACCAGAGATTATTTCAGAGCCAAATATGGAAAGGATTTTACCAGACATGGAGAGTTGTGAAACTTCGACTCAACAGTCAATCGATAATACAACAGATATACGACATGATAATAATTGTAATGATAATGATAATAATAATATTTCTGTTAGACAATTGGATCATCGAGATCAACAGACCCAGAGTAATTCACCGAGGCCGGTTATAAATAACAGTGAAATTGTGAGAAATGACACTGTCTCAGTGGTCTGTGAATCATCAGCTTCTGAAGAAGATAAGTCTGAGAGTATTCTTCCAGATATGGAGGAACCTGAGCCCGATATTGATACTGACGTTCAATGTAGAAATGAACAACAACAACAGCAACAACATCATAATCAAGATCGACATCAGAGATTTTCATCTACGTACAATAGTCAAGCTGACAATGAAAATAGTAATACTGACACGCGATTAAATCACCTTACAGAAGATCAAGATAAATTGGAGTCTCAGGAATCATTGAGCTCAGAAAAATTGAAGTCATCAGAGTCTATTGAATTAGAAGCTAATTCAGCTCCAACTCCAATAATTATAGATACTTGTCAGCAAAATGAAGAAGAGCATCTGGAACATCTTTTTATTACAATGATTGAGTCAGGTTTTGTCGAGACGCATGAAAAAACAAATGATGATGAGTCCATTCAGGAATCTAACCTTAAAATAAATAAAACTGCAAAGCAAAATGAAGAACAAATGGAAGAAGAATCTGAAAATCATCTTACTCCTGAAGATATAAAATATATTAATAACACCGAAGCTTGCGTAGAAACAGATAAGTGCATTGACACAAGTATTATTGACGAGTGCGACTTTGACTATGCATATCGGTATAAACATAGTTTATCAGCGCCTGCGTCTCCAGTATCAGCGTCAAAAAAAATATCACACTCTTATTCAACGAGATCTGAATGTGGTTCTAATGAAAATCTTAATTTTTATCCAGCTGGTTTTGACGCATCTACATTGCAAGTTGATGTTGATGATGAAGATGAAGATGAGGAAGACGATGATGATGAAGAAGAGGATGACGATGATGATGAAGAAGAGGAGGAAGAGGAAGAAGAGGAAGAATCTAAACATGTAGGTGATAATTTTGATGAAGAGGATATGGAGATTGAAGAAATAGCTAGTCCCCATACACCATTTGCCAAACAAAATGATGATTTAGATAATGTACGTTCTCATACGCCATTATCCGCTATCAGTGGTATCTCTGGTCTTCGAGTACGCAGAGATCTCAGTAAACCATCATCCCCTATATCGATGCGGTCATTTGGTCAAATGGAAGCTGACAGTCATTATGAAGAGACCAACGACTCTGTGATAAGTCAACATAAAAATTCAGCTGATTGCTTACAAGTCGACAACAACGCAGCAGTAAGATTAAATCATGATGAATCTCAAGGTGCCAGCATTGAAACTGCAAGAAAATCCGAGAATAATAGTAATGGCATCTTTCATCAGTCGGTCATTACGGAGCATGTTAGCTCATTTCCAGCAATTCACTCCCAACAATCAATCACCAATGAAAATTACACGATATGTAGTAATAAAATTACAACGCATCAATCAAATTTAACTTGTGGTTTGTCGCAAGCAACTGACCCTACGACAAGTATTGAATCTAAGAGTTTCCAGTCAACAATAACTAAAACAGTAAATCACATACCAACGACCGAACTTCTTAATATCAATGAAGATGCACATTCGGGTCCTATGAATGTATTTGAATTCGATGGACTTCAAATTCTCGTTCCTAGTACATTTATAAGTGAATCATCACAGAAAGCAATTAGCGCAACGAGTCAACAATCAATGGCAAGCAGTGAAGGTGGTACGGGTATCGATGAAGAAGTAAAGAGTGTCAACATGCGGGCAGACGAGACAATGCCACCAAGGGGAGAGCTGTCTGAACAGGAAAGCAACGGCTGCACAGAACATTCGGCTTGGCAGTTGTATGTTGGTCAAGAGTCTTCCCGTATGTCGACATCGTACGATCTGATGGCACGTGAAAGCTGGGAAGAGTCAGAAGGATCTGATAATGAAGCCGGGGTTCCACTGTTAGACAGTCGTTCGCTCGCTACCCACTTTACTTCTAGCTTATTTCTTGATCGAGACAGAAAAACACCGACAAAACAACGTACATTCAAGTGCTCACAGTGTACAGAGGTTTTTGACTGCCCGAAAGAACGTCGTGTTCACAGTACAACAGTACACAAAGAAGCTGGTCCAAGTAACAGTTGCAGTAACAGTGGTATTAACGAACAGTCTGAAACAAAAGACATAAAACTTCTCGATGGCCCCATGAATCCTTTTGAGGATATATTTGTTCCTGGTCTACATGTTCAACAGGGCTATCAACAGCAACAGCCGTTGCTACATCAAATGCAACCACCACAACAATTAACAGACATAAGCAAAGTTGAAGCAGATGAAAAATCTGAAAGTCTAGCTTTGACACAAGGCATAGAAATTTCCTGTGCTATGTGTACTCAACGTTTTAGTTCTGAACGAAGTTTACAGATGCACAATAGAAGGGTTCATGGTACCGAGGTTGCACGACGTCTTCATGATATTTCAAAGTGTCAAATATGTAACGAAGAATTCCCCTCAGTCGCTTTATTTAACGCTCATTTAAAAATTCATCCGCTGGAGTGTTCACAGTGTGGTAAATATTTCTATCGTAAACAAAATTTCAAATTACATATGAAACGTCATCTTGGTATAAAACCATTTCCATGTACTATTTGCGATAAAGCATTTTTAACAAAACAAAAATTAGATGAACATACGAATGGGCATACAGGTAATGCACCAGTTAAATGCAACCTCTGTAATGAAACATTCCGTAGATACTCAAATTTAACTCAACATAAAAATCGTCATCATTTAAATATAAAACGTAAGTTGAAAGATTATATATGTCACTGTGGTGAAGTATTTCATACTAAAAAGAAGCTTGCTTGGCACAAGGAAACACACGATGATAAACCTAAAGCGTGTACCTATTGTAATGAAAGATTTATACACATGGCTAGTTTAACACGTCACATGAGACGTGCTCATAATCGTCGTTTTGTACCAGATGCTCAACGGGAAAATGAAAATGTCGAGTGTCCAATATGTAAGTGCATATATCTACGTTCATCACTGTCAGTTCATATGCGTGTACACAATGGCGAACGTCCCTACGAGTGTCAGGTGTGTTCAAAAGCATTCAGTACCAAGTGGAATTTACAATTACATAAATGGACTCATGCAGCACGTAGCACCAAACCCTTTAAGTGCAATCAGTGTAGCGCTGCGTTTTACCGTCACAGTGACTACACGGCACATATGAATTCTCACAGAAATGTCAGGCCATATACGTGTAATTATTGTGGCGCTCAATTTATAAGAAAATACAATTGTTTAAGACATGTTAAAGAACATGAAGAAAATAAAGCATACACGTGCGATGTATGCAATAAAACTTTCCACCGATCATACTATCTTAAAGAGCATTTACGTGTTCACAGTGGTGCACGACCATACACGTGTCACATATGCGGCAAATCAAGCAGTACCAAGTCTAATCACAATAAGCATGTAAGAATTCATCATGCTCGTGAGCCTGTAAATACCGAAAATTGA
- Protein Sequence
- MELGVTTDIGGAVACPVCTLYLREGISLQRHLDTHPKEQVIEALIKASGSSSSLSSLQLPQTQVPQVPQTLQPSPPQQQVNAQSSTSAPTAAAVAAAHIPTQAPFPIGPVFECPPINAMMPPQFASFNYQQFVNNGTMMIPQYAMAPPQANQMMQMLYNPYSMYQQQQVPTVQMISPVSALPTTRIRPVVTVANAETNRNVIISTSTNEHKQIIPEIISEPNMERILPDMESCETSTQQSIDNTTDIRHDNNCNDNDNNNISVRQLDHRDQQTQSNSPRPVINNSEIVRNDTVSVVCESSASEEDKSESILPDMEEPEPDIDTDVQCRNEQQQQQQHHNQDRHQRFSSTYNSQADNENSNTDTRLNHLTEDQDKLESQESLSSEKLKSSESIELEANSAPTPIIIDTCQQNEEEHLEHLFITMIESGFVETHEKTNDDESIQESNLKINKTAKQNEEQMEEESENHLTPEDIKYINNTEACVETDKCIDTSIIDECDFDYAYRYKHSLSAPASPVSASKKISHSYSTRSECGSNENLNFYPAGFDASTLQVDVDDEDEDEEDDDDEEEDDDDDEEEEEEEEEEESKHVGDNFDEEDMEIEEIASPHTPFAKQNDDLDNVRSHTPLSAISGISGLRVRRDLSKPSSPISMRSFGQMEADSHYEETNDSVISQHKNSADCLQVDNNAAVRLNHDESQGASIETARKSENNSNGIFHQSVITEHVSSFPAIHSQQSITNENYTICSNKITTHQSNLTCGLSQATDPTTSIESKSFQSTITKTVNHIPTTELLNINEDAHSGPMNVFEFDGLQILVPSTFISESSQKAISATSQQSMASSEGGTGIDEEVKSVNMRADETMPPRGELSEQESNGCTEHSAWQLYVGQESSRMSTSYDLMARESWEESEGSDNEAGVPLLDSRSLATHFTSSLFLDRDRKTPTKQRTFKCSQCTEVFDCPKERRVHSTTVHKEAGPSNSCSNSGINEQSETKDIKLLDGPMNPFEDIFVPGLHVQQGYQQQQPLLHQMQPPQQLTDISKVEADEKSESLALTQGIEISCAMCTQRFSSERSLQMHNRRVHGTEVARRLHDISKCQICNEEFPSVALFNAHLKIHPLECSQCGKYFYRKQNFKLHMKRHLGIKPFPCTICDKAFLTKQKLDEHTNGHTGNAPVKCNLCNETFRRYSNLTQHKNRHHLNIKRKLKDYICHCGEVFHTKKKLAWHKETHDDKPKACTYCNERFIHMASLTRHMRRAHNRRFVPDAQRENENVECPICKCIYLRSSLSVHMRVHNGERPYECQVCSKAFSTKWNLQLHKWTHAARSTKPFKCNQCSAAFYRHSDYTAHMNSHRNVRPYTCNYCGAQFIRKYNCLRHVKEHEENKAYTCDVCNKTFHRSYYLKEHLRVHSGARPYTCHICGKSSSTKSNHNKHVRIHHAREPVNTEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00379092;
- 90% Identity
- iTF_00382069;
- 80% Identity
- -