Ccon007416.1
Basic Information
- Insect
- Cotesia congregata
- Gene Symbol
- -
- Assembly
- None
- Location
- contig:2930356-2935718[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 6.4 7.6e+02 1.6 0.1 2 17 60 75 59 76 0.90 2 21 0.0086 1 10.6 3.3 2 23 229 251 229 251 0.97 3 21 0.038 4.5 8.6 1.8 1 23 315 337 315 337 0.97 4 21 0.039 4.6 8.6 0.2 1 23 386 408 386 408 0.98 5 21 0.0077 0.91 10.8 0.4 1 20 465 484 465 486 0.95 6 21 0.47 56 5.2 1.0 1 20 498 517 498 519 0.82 7 21 0.005 0.59 11.4 0.0 3 23 573 593 571 593 0.97 8 21 0.00021 0.025 15.7 0.4 1 23 599 622 599 622 0.95 9 21 3.1e-07 3.6e-05 24.6 0.2 2 23 660 682 659 682 0.96 10 21 0.00077 0.092 13.9 0.4 1 23 688 711 688 711 0.89 11 21 4e-05 0.0048 18.0 4.5 1 23 716 739 716 739 0.97 12 21 0.00097 0.12 13.6 0.5 3 23 748 768 746 768 0.92 13 21 0.028 3.3 9.0 0.6 2 20 821 839 820 839 0.95 14 21 0.035 4.1 8.7 0.1 2 23 860 881 859 881 0.96 15 21 0.00032 0.039 15.1 0.5 2 23 898 919 897 919 0.96 16 21 0.0011 0.13 13.4 0.1 1 23 939 962 939 962 0.90 17 21 0.078 9.3 7.6 0.3 2 23 1029 1051 1028 1051 0.95 18 21 1.3e-05 0.0016 19.5 0.4 2 23 1084 1106 1083 1106 0.95 19 21 1.1 1.3e+02 4.0 1.0 1 23 1112 1136 1112 1136 0.96 20 21 0.9 1.1e+02 4.3 0.9 1 23 1141 1164 1141 1164 0.96 21 21 0.15 18 6.7 0.0 2 23 1194 1216 1194 1216 0.93
Sequence Information
- Coding Sequence
- ATGGATGATGATGTGGTCGAGCTGAATAACGTTGAAAATCTCTGCAGACTATGTCTATCATCAGACGACCCCAAGTCTCCGATATTCGGGCTCCAGGAGGCGTCGGTCTCGCTAGCGGATAAAATTCAAGCATGTCTATCAATCGAGATTTTGCTGACTGACAAATTCTCAAAGCTGATTTGCCTTAAGTGTCTCAAAAGCGTCAATCAGTGGCATAATTATAAGGAATCATGTCTCAAGTCTCAGGAAAAGCTGCAAAGGTGGCTTGTCAAGCAAGCAGAAATTACTGTCGCTATGCCAGCAATAAAGACCGAGCCACTGGACATAGAAATATACGAAGACAATATCGAGATCGTTGAAATGTCCGAAGATGAATTGAACCACGAACTACCAAATGATAAGATTAATTCATCGGAAATGGCCACCCGTGCGAGCCACCGGATGGATATTAATTTACACAACGCAGAACCAACCGACGACGAGGAGGACCTGGATTGTAACATTGACGTGGAATCAATAAACGAGAACGAGACCGAGAGTGAACTGTTACTGAACCCAATGGCCCTGGGCGCGAACAAGAACATGGAACCCGACTCTACCCAAAAATTCAACGTCCGCGCAGTCAGAAAAAAAGTACGCCGCGGTCCCCACACCCACTTCCGCGGTCCAAGAACCTTCAAGCGTCGTTGTCCCGACTGCCAGCACGTTCTCCACTCAAAATCCTCCTACGCCCGGCATATAAACCGGTACCACCGCGATGGACCCACAGCAGAGCTCTCTAATTCTATCCCGAACTCCCAGCACAATGGCGCCCCCTATCCGAGCGAAGACGCGCAGTCAGCAGCTGAAGAAATCGAGGACGTCGAAGACGAGCTGGTCAGTCTCGAAAAAGACGCTCCCCTCACCCAGGTCCAGGAGTCAATTATCAGCCAGCTTAAGACCTTTTCCTGCTACGCCTGTCAGCAGTCCTTCAACGACCGTCGCAGCACTTTGAACCACATCCGCCAGCACATGCCCGACCTAAGACCCTACACCTGCATCGCCTGTCTCACCGAGTTCCCCGATCGTTCCATTTACAAGCTCCACTGCGGCGCTTCCTTCGAATGTGCCATGAAGATCGCCCTGGTGGTTCCCAAGCACGGAACAGAGAAGTACTTCACCTGCAACATGTGCTTGAGACCCATGCCGAACCGCAAGGAGCTGATTGCTCACTTGTCCAAGCATTCGGATCGCCAGTACGAGCAGTTGACCGCACCCGGTAAGAAACCTCCCAAGTTGAAGCCAGTCAGTTCGAATTCAAATTCTGCTGGTCAACTTCCAGCAAAGTCTACTACTTCTAGCGCTGCTTCTACCACAATTGGACCCTATCGGAACGGGGATCCAGCTCACAATCACACCTGCGATTTCTGTGGGATGATTTACCGCTACAAGCCAAATATGATAAAGCACCAGGACCTTTGCAAGCGATTGCCTCCAGAGGAACGGACTTCCTACCGTTGCGTTCATTGCGGTATGACTTTCCTGGTTTTCAAAAAGTTCCAGTCTCATATTGCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACGCAAATGAATTTTTAATTCACCATCAGAAGCACCGGATGATAAACAAAACCGCAGAGACCCACGCGATGAACCATTGGAACAAAACTGTTACCATGAAATACGGCTGCGCTGTTTGTCCAGAGCAATTTGATACTAAAGCTGAGTTGGCTGATCATCGCACGACTCACTTGAAGGTTAAGATCTTCTCCTGTAGCATTTGCCGAAGAATGTTTGGCAATTCTCAGGCGCTTAAGGAACACATGAGCGAGGACCATTCTCCGGAATTGGACCCTAATATTTCGGCGTTGGACTTCCTGGACCAGAGTAATGAACTTCCGAACACCAGTAACTGGTCGGTTAACACAGACCCGGGAGCTCGAAGTACCGAGTGCACTGTTTGTGGAAAAGTATTCGCGAATTATCCGAATTTACGGAGACACATCAGATCGGTTCATGCTGGTGATGATAGATTCAATTGTTCCAAGTGTACCAAAACGTTTACCAGCGAAGCGGAACTTGCTGAACACAATGAGAACGCGCATACTGAGGCTACCCATCGTTGCAAGTTCTGCAAGAAGAAGTTCTCCAATAATCGTGCCCTGGAGTCGCATCAGCAGACCGCTCATGGGGTCAATGATATTAATTTGGCTTGCGATATTTGTGGCAAGCAATTTGGAAATGAAACTTCGTTGAAAATCCATCGAGGACATCATTTCCGGCGCGACTCAAGGCTCAGTATTCGGAACATGCCGCATCCCATGGACCAGGTCCAGGTTGAGATGAACGAGTCAGTGGAGATTGTGTCACCTAGATCTGGTCGGAAGAAATCTACTCACCGAAGGTCGTCTTCGCCGAAGACTTCGGAATTAAAGTGTCAGGTTTGCGATGACAAGTTCTCGGATGTTCATGATCTGAGGAAGCATTTGTGGGATGTACATTGCGCGAAGAACAAATCTGAAAAATCTTTTATGGAAGAAAATTCACTGCAGTGCGAACTTTGTACCAATGTTCTGCCGGATGAAAAGAGTCTGGAGGAACACATGAAGTGGCACAAAGACAATCCTATTTTATCGGATGGATTGCCGAGGGCTGTAGATATTTCTTGCGACGTTTGTGGCAAGTTTTACAGCTCGATGAAAGCCCTGTGGAAGCACAAGAAGCTGCACAGCAAAACTGGAGTTACTATGAAGTTTTCTTCGGTTAAAAAAGCTGCGCTTTCACAGTTCCCCTGTCCAGTTTGTAGGAAAGTATTTGGGAACGAAACTTCAATGAAGAAACACAAAGCGGCTGCGCATTACGCGCGGCGCACTATTGCTGCGCCTATTGTTACGACAAAGGTGGCGCGAAAGTCGATCAATGAAGGTGAGGTTAGGCCCAAGAGACCTAAATTAGATTTTGATATTATTCGCAAGGCTTACAATCTAGAACCGAGCGGTTACGTCGCTGGTGGAAGTAATAGTAATAATAATAGTAATAGTAGTAAAAAACCGGTTACTTGTGGAATTTGCAAAAAATTATTACCGAGTATGAGCTCGTTGTACAAACACCGGCAAAACGTCCATAAAAATTTTGACAAATCGTTGGAGAACAACGAAGACAACAGCAGAAACGACTCAATTTCTAGAAACGAGGAAGAGAGTCCCGGAAAATCTCGGGTTCCTTGTACCGAGTGTGACAAAGAATTTTCTACCTTGTCAAACATGAAGCAACATTTGACTAAAGTCCACGGTAACGGGAATAAGTACCACTGCAGCGCTGATGGGTGCAATCAGTACTTCAACTCGCCCTTGGCTAAGCAGTTACATGAAAAAACGCACATGAATGTTCTATACAGGTGCGCTATCTGTGCGCGTCATATGTTCCAGCGCAGTGCGATGATTCAGCACCTTACTACTGAGCACAAAGGTCAATACTCGTCTAGTGTTGAAAAAAGCCTTTACAAGAAAACTGACTTGAGCAATTACCAAGTTCACGGAGCTGAAGGACGTGTCTGTCCAGTTTGTAATGTTACTTACCCTAATATTAAAGCCATGAAGATTCACTACGTTAAAATTCATGAAAATAGTTAA
- Protein Sequence
- MDDDVVELNNVENLCRLCLSSDDPKSPIFGLQEASVSLADKIQACLSIEILLTDKFSKLICLKCLKSVNQWHNYKESCLKSQEKLQRWLVKQAEITVAMPAIKTEPLDIEIYEDNIEIVEMSEDELNHELPNDKINSSEMATRASHRMDINLHNAEPTDDEEDLDCNIDVESINENETESELLLNPMALGANKNMEPDSTQKFNVRAVRKKVRRGPHTHFRGPRTFKRRCPDCQHVLHSKSSYARHINRYHRDGPTAELSNSIPNSQHNGAPYPSEDAQSAAEEIEDVEDELVSLEKDAPLTQVQESIISQLKTFSCYACQQSFNDRRSTLNHIRQHMPDLRPYTCIACLTEFPDRSIYKLHCGASFECAMKIALVVPKHGTEKYFTCNMCLRPMPNRKELIAHLSKHSDRQYEQLTAPGKKPPKLKPVSSNSNSAGQLPAKSTTSSAASTTIGPYRNGDPAHNHTCDFCGMIYRYKPNMIKHQDLCKRLPPEERTSYRCVHCGMTFLVFKKFQSHIAXXXXXXXXXXXXXXXXXXXANEFLIHHQKHRMINKTAETHAMNHWNKTVTMKYGCAVCPEQFDTKAELADHRTTHLKVKIFSCSICRRMFGNSQALKEHMSEDHSPELDPNISALDFLDQSNELPNTSNWSVNTDPGARSTECTVCGKVFANYPNLRRHIRSVHAGDDRFNCSKCTKTFTSEAELAEHNENAHTEATHRCKFCKKKFSNNRALESHQQTAHGVNDINLACDICGKQFGNETSLKIHRGHHFRRDSRLSIRNMPHPMDQVQVEMNESVEIVSPRSGRKKSTHRRSSSPKTSELKCQVCDDKFSDVHDLRKHLWDVHCAKNKSEKSFMEENSLQCELCTNVLPDEKSLEEHMKWHKDNPILSDGLPRAVDISCDVCGKFYSSMKALWKHKKLHSKTGVTMKFSSVKKAALSQFPCPVCRKVFGNETSMKKHKAAAHYARRTIAAPIVTTKVARKSINEGEVRPKRPKLDFDIIRKAYNLEPSGYVAGGSNSNNNSNSSKKPVTCGICKKLLPSMSSLYKHRQNVHKNFDKSLENNEDNSRNDSISRNEEESPGKSRVPCTECDKEFSTLSNMKQHLTKVHGNGNKYHCSADGCNQYFNSPLAKQLHEKTHMNVLYRCAICARHMFQRSAMIQHLTTEHKGQYSSSVEKSLYKKTDLSNYQVHGAEGRVCPVCNVTYPNIKAMKIHYVKIHENS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00380546;
- 90% Identity
- iTF_00380546; iTF_00379815; iTF_00381302;
- 80% Identity
- -