Cfla006635.1
Basic Information
- Insect
- Cotesia flavipes
- Gene Symbol
- -
- Assembly
- None
- Location
- scaffold:2583-7512[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.006 0.59 10.7 3.3 2 23 203 225 203 225 0.97 2 21 0.026 2.6 8.6 1.8 1 23 289 311 289 311 0.97 3 21 0.027 2.7 8.6 0.2 1 23 360 382 360 382 0.98 4 21 0.0054 0.53 10.8 0.4 1 20 436 455 436 457 0.95 5 21 0.17 17 6.1 1.2 1 23 469 492 469 492 0.86 6 21 0.25 25 5.6 2.4 2 23 498 519 497 519 0.96 7 21 0.0024 0.23 11.9 0.1 3 23 544 564 542 564 0.97 8 21 0.00013 0.013 15.9 0.4 1 23 570 593 570 593 0.96 9 21 1.2e-07 1.2e-05 25.5 0.2 2 23 631 653 630 653 0.96 10 21 0.0013 0.13 12.7 0.3 1 23 659 682 659 682 0.89 11 21 2.8e-05 0.0028 18.0 4.5 1 23 687 710 687 710 0.97 12 21 0.00068 0.067 13.6 0.5 3 23 719 739 717 739 0.92 13 21 0.02 1.9 9.0 0.6 2 20 792 810 791 810 0.95 14 21 0.025 2.4 8.7 0.1 2 23 831 852 830 852 0.96 15 21 0.00023 0.022 15.1 0.5 2 23 869 890 868 890 0.96 16 21 0.00077 0.076 13.5 0.1 1 23 910 933 910 933 0.90 17 21 0.055 5.4 7.6 0.3 2 23 1006 1028 1005 1028 0.95 18 21 9.3e-06 0.00091 19.5 0.4 2 23 1061 1083 1060 1083 0.95 19 21 3.4 3.4e+02 2.0 0.6 1 23 1089 1113 1089 1113 0.90 20 21 0.62 61 4.3 0.6 1 23 1118 1141 1118 1141 0.96 21 21 0.11 11 6.7 0.0 2 23 1171 1193 1171 1193 0.93
Sequence Information
- Coding Sequence
- ATGGATGATGATGTGGTTGAGCTGAATAACGTTGAAAATCTCTGCAGACTATGTCTATCATCAGACGACCCCAAGTCTCCGATATTCGGGTTCCAGGAGTCGTCGTGTCTCAAAAGCGTTAATCAGTGGCATAATTACAAGGAATCATGTCTCAAGTCCCAGGAAAAGCTGCAAAGGTGGCTTGTCAAGCAAGCAGAAGTTACTGTTGCTATGCCAGCAATAAAGACCGAGCCCCTGGACATAGAAATATACGAAGACAATATCGAGATCGTTGAAATGTCCGAAGATGAATTGAACCACGAACTACCAAATGATAAGATTAATCGATCGGAAATTGCCACCCGTGGGAGCCACCGGATAGACATTAGTTTACACAACAACGCAGGAGAACCAACTGACGACGAGGAGGACCTGGATTGTAACATTGACGTGGAATCAATAAACGAGAACGAGACCGAGAGTGAACTGTTACTGAACCCAATGGCCCTGGGCGCGAACAAGAACATGGAACCGGACTCTACCCAGAAATTCAACGTCCGCGCAGTCAGGAAAAAAGTACGGCGTGGTCCCCACACCCACTTCCGCGGTCAAAGAACCTTCAAGCGTCGTTGTCCTGACTGCCAGCACGTTCTCCACTCAAAATCCTCGTACGCCCGGCATATAAACCGGTACCATCGCGATGGACCGACAGTCGAGCTCTCTAATTCTATCCCGAACTCCCAGCACAATGGGGCCCCCTACCCGAACGAAGACGTGCAGTCAGCAACTGAAGAAATCGAGGACGTCGAAGACGAACTGGTCAGTCTTGAAAAAGACGCTCCTCTGACCCAGGTCCAGGAATCTATTATCAGCCAGCTAAAGACCTTTTCCTGCTACGCCTGTCAGCAGTCCTTCAACGACCGTCGCAGCACTCTAAATCACATCCGCCAGCACATGCCCGACCTAAGACCCTACACTTGCATCGCCTGTCTCACCGAGTTCCCCGATCGTTCCATCTACAAGCTCCACTGCGGCGCTTCCTTCGAATGTGCCATGAAGATCGCCCTGGTGGTTCCCAAGCACGGAACAGAGAAGTACTTCACTTGCAACATGTGCTTGAGACCCATGCCGAACCGCAAGGAGCTGATTGCTCACTTGTCCAAGCACTCGGATCGTCAGTACGAGCAGTTGACTGCACCAGGTAAGAAACCTCCCAGGTTGAAGCCAGTCAGCTCCAGTTCTGCTGGTCAAATTCCAGCAAAGTCTACTTCTAGCGCTGTTTCTACCACTATTGGACCCTACCGTAACGGGGACCCAGCTCACAACCACACCTGCGATTTCTGTGGGATGATTTACCGCTACAAGCCAAATATGATAAAGCACCAGGACCTTTGCAAGCGATTGCCTCCAGAGGAACGAACTTCCTATCGCTGCGTTCACTGCGGTATGACTTTCTTGGTTTTCAAGAAGTTCCAGTCTCATATTGCTGCGGAACACAACAAGAAAGAGCTGATTTGCTTCGTTTGTAAGAGCAAATTTCGATACGCGAATGAGTTCTTGATTCACCATCAAAAGCATCGCATGATAAACAAAACCGCAGAGACCCACGCGATGAATCACTGGAACAAAACTGTTACCATGAAGTACGGCTGCGCTGTTTGTCCAGAGCAGTTTGATACTAAAGCTCAGTTGGCCGATCATCGCACGACTCATTTGAAGGTTAAGATTTTCTCCTGTAGCGTTTGCCGAAGAATGTTTGGAAATTCCCAGGCGCTTAAGGAACACATGAATGAGGATCATTCTCCGGAATTGGACCCTAATATTTCGGCGTTGGACTTCCTGGACCAGAGTAATGAACTTCCGAACACCAGTAACTGGTCGGTTAACACAGATCCAGGGACTCGAAGTACTGAGTGCACTATTTGCGGAAAAGTATTCGCAAATTACCCAAATCTCCGGAGACACATCAGATCGGTTCATGCTGGGGATGATAGATTTAACTGTTCCAAGTGTTCCAAGACATTTACCAGCGAACCGGAACTTGCTGAACACAATGAGAACGCGCATACTGAGGCTACCCATCGTTGCAAATTTTGCAAAAAAAAGTTCTCCAATAATCGTGCTCTGGAGTCACATCAGCAGACCGCTCATGGTGTTAATGATATTAATTTAGCTTGTGATATTTGTGGCAAGCAATTTGGAAATGAAACTTCGTTGAAAATTCATCGAGGACATCATTTCCGGCGCGACTCAAGGCTCAGTATTCGGAACATGCCGCATCCCATGGACCAGGTTCAGGTTGAGATTAACGAACCAGTGGAGATAGTGTCACCTAGATCTGGTCGGAAGAAATCTACTCACAGAAGGTCATCTTCACCGAAGGCTTCGGAATTAAAGTGTCAAGTCTGCGATGACAAATTCTCGGATGTTCATGATTTGCGGAAGCATTTGTGGGATGTTCATTGCGCGAAGAACAAATCTGAGAAATCTTTTATGGAAGAAAATTTACTACAGTGCGAACTTTGTACCAACGTTTTGCCGGATGAAAAGAGCCTAGAGGACCACATGAAGTGGCACAAAGACAATCCTATTTTGTCAGATGGATTGCCGAGGGCTGTAGATATTTCTTGCGATGTTTGTGGAAAGTTTTACAGCTCGATGAAAGCGCTGTGGAAGCACAAGAAGCTGCACAGCAAAACTGGAGTTACTATGAAGTTTTCTTCGGTTAAAAAAGCTGCGCTTTCTCAGTTCCCCTGTCCAGTTTGCAGGAAAGTATTTGGGAATGAAACTTCTATGAAGAAACACAAAGCCGCTGCGCATTATGCGCGACGCACTATTGCTGCGCCTATTGTTACGACAAAGGTGGCGCGGAAGTCGATTAATGAAGGCGAGGTTAAACCCAAGAGACCTAAATTAGATTTTGATATTATTCGCAAGGCTTACAATCTCGAGCCGAGTAGTTACGTCGCTGGAGGAAGTAATAGTAATAATAATAGTAATAGTAGTAGTAGTAGTAATAGTAATAAGAAACCGGTTACTTGTGGAATTTGCAAAAAATTATTACCAAGCATGAGCTCGCTGTACAAACACCGGCAAAATGTTCATAAAAATTTTGACAAATCGTTGGAGAACAACGAAGATAACAACGGGAACGAGTCGAGTTCTAGGAACGAGGAAGAAAATCCCGGAAAATCTCGGGTTCCTTGCACCGAGTGTGACAAGGAATTTTCTACCCTGTCGAACATGAAGCAGCATTTGACCAAGGTTCACGGTAATGGGAATAAGTATCATTGCAGCGCTGACGGGTGCAATCAGTACTTCAACTCTCCTTTGGCTAAACAGTTACATGAAAAAGCCCACATGAATATTCTCTACAGGTGCGTTATTTGTGCGCGTCATATGTTCCAGCGCAGTGCGATGATTCAGCACCTTGCTACTGAGCATAAAGGTCAATACTCGTCTAGTGTTGAAAAAAGCCTTTACAAAAAAACTGATTTAAGCAATTACCAAGTTCACGGAGCTGAAGGACGTGTATGTCCAGTTTGTAATGTTACTTATCCTAATATTAAAGCCATGAAGATTCACTACGTTAAAATTCATGAAAATAGTTAA
- Protein Sequence
- MDDDVVELNNVENLCRLCLSSDDPKSPIFGFQESSCLKSVNQWHNYKESCLKSQEKLQRWLVKQAEVTVAMPAIKTEPLDIEIYEDNIEIVEMSEDELNHELPNDKINRSEIATRGSHRIDISLHNNAGEPTDDEEDLDCNIDVESINENETESELLLNPMALGANKNMEPDSTQKFNVRAVRKKVRRGPHTHFRGQRTFKRRCPDCQHVLHSKSSYARHINRYHRDGPTVELSNSIPNSQHNGAPYPNEDVQSATEEIEDVEDELVSLEKDAPLTQVQESIISQLKTFSCYACQQSFNDRRSTLNHIRQHMPDLRPYTCIACLTEFPDRSIYKLHCGASFECAMKIALVVPKHGTEKYFTCNMCLRPMPNRKELIAHLSKHSDRQYEQLTAPGKKPPRLKPVSSSSAGQIPAKSTSSAVSTTIGPYRNGDPAHNHTCDFCGMIYRYKPNMIKHQDLCKRLPPEERTSYRCVHCGMTFLVFKKFQSHIAAEHNKKELICFVCKSKFRYANEFLIHHQKHRMINKTAETHAMNHWNKTVTMKYGCAVCPEQFDTKAQLADHRTTHLKVKIFSCSVCRRMFGNSQALKEHMNEDHSPELDPNISALDFLDQSNELPNTSNWSVNTDPGTRSTECTICGKVFANYPNLRRHIRSVHAGDDRFNCSKCSKTFTSEPELAEHNENAHTEATHRCKFCKKKFSNNRALESHQQTAHGVNDINLACDICGKQFGNETSLKIHRGHHFRRDSRLSIRNMPHPMDQVQVEINEPVEIVSPRSGRKKSTHRRSSSPKASELKCQVCDDKFSDVHDLRKHLWDVHCAKNKSEKSFMEENLLQCELCTNVLPDEKSLEDHMKWHKDNPILSDGLPRAVDISCDVCGKFYSSMKALWKHKKLHSKTGVTMKFSSVKKAALSQFPCPVCRKVFGNETSMKKHKAAAHYARRTIAAPIVTTKVARKSINEGEVKPKRPKLDFDIIRKAYNLEPSSYVAGGSNSNNNSNSSSSSNSNKKPVTCGICKKLLPSMSSLYKHRQNVHKNFDKSLENNEDNNGNESSSRNEEENPGKSRVPCTECDKEFSTLSNMKQHLTKVHGNGNKYHCSADGCNQYFNSPLAKQLHEKAHMNILYRCVICARHMFQRSAMIQHLATEHKGQYSSSVEKSLYKKTDLSNYQVHGAEGRVCPVCNVTYPNIKAMKIHYVKIHENS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00380546;
- 90% Identity
- iTF_00379076;
- 80% Identity
- -