Crub000074.1
Basic Information
- Insect
- Cotesia rubecula
- Gene Symbol
- -
- Assembly
- None
- Location
- scaffold:1937-7160[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.007 0.72 10.8 3.3 2 23 133 155 133 155 0.97 2 21 0.03 3.2 8.7 1.8 1 23 219 241 219 241 0.97 3 21 0.031 3.3 8.7 0.2 1 23 290 312 290 312 0.98 4 21 0.0062 0.65 10.9 0.4 1 20 367 386 367 388 0.95 5 21 0.2 21 6.2 1.2 1 23 400 423 400 423 0.86 6 21 0.14 15 6.6 2.1 2 23 429 450 428 450 0.96 7 21 0.004 0.42 11.5 0.0 3 23 475 495 473 495 0.97 8 21 0.00017 0.018 15.8 0.4 1 23 501 524 501 524 0.95 9 21 2.5e-07 2.6e-05 24.7 0.2 2 23 562 584 561 584 0.96 10 21 0.0011 0.11 13.3 0.4 1 23 590 613 590 613 0.89 11 21 3.3e-05 0.0034 18.1 4.5 1 23 618 641 618 641 0.97 12 21 0.00079 0.082 13.7 0.5 3 23 650 670 648 670 0.92 13 21 0.023 2.4 9.1 0.6 2 20 723 741 722 741 0.95 14 21 0.038 3.9 8.4 0.0 2 23 762 783 761 783 0.96 15 21 0.00026 0.027 15.2 0.5 2 23 800 821 799 821 0.96 16 21 0.00089 0.093 13.6 0.1 1 23 841 864 841 864 0.90 17 21 0.063 6.6 7.7 0.3 2 23 937 959 936 959 0.95 18 21 1.1e-05 0.0011 19.6 0.4 2 23 992 1014 991 1014 0.95 19 21 4 4.1e+02 2.1 0.6 1 23 1020 1044 1020 1044 0.90 20 21 0.56 58 4.8 0.5 1 23 1049 1072 1049 1072 0.96 21 21 0.12 13 6.8 0.0 2 23 1102 1124 1102 1124 0.93
Sequence Information
- Coding Sequence
- ATGCCGGCAATAAAGAACGAGCCACTGGACATAGAAATATACGAAGACAATATCGAGATCGTTGAAATGTCCGAAGATGAGTTGAACCATGAACTACCAAATGATAAGATTAATCCATCGGAAATTGCCATCCGTGCAAGCCACCGGATGGACATAAGTTTACACAACAGCGCAGCAGAACCAACCGACGACGAGGAGGACTTGGATTGTAACATTGACGTGGAATCAATAAACGAGAACGAGACCGAGAGTGAACTTTTACTGAACCCAATGGCCCTGGGCGCAAACAAGAACATGGAACCCGACTCTACCCAAAAATTCAACGTCCGCGCAGTCCGAAAAAAAGTACGCCGCGGTCCCCACACCCACTTCCGCGGTCCAAGAACCTTCAAGCGTCGTTGTCCCGACTGCCAGCACGTTCTCCACTCAAAATCCTCCTACGCCCGGCATATAAACCGGTACCACCGCGATGGACCCACAGCAGAGCTCTCTAATTCTATCCCGAACTCCCAGCACAATGGCACCCCCTACCCGAGCGAAGACGCGCAGTCAGCAGCTGAAGAAATCGAGGACGTCGAAGACGAATTGGTCAGTCTTGAAAAAGACGCTCCCCTCACCCAGGTCCAGGAGTCAATTATCAGCCAGCTTAAGACCTTTTCCTGCTACGCCTGTCAGCAATCCTTCAATGACCGTCGCAGCACCCTGAACCACATCCGCCAGCACATGCCCGACCTAAGACCCTACACCTGCATCGCCTGTCTCACCGAGTTCCCCGATCGTTCAATTTACAAGCTCCACTGCGGCGCTTCCTTCGAATGTGCCATGAAAATCGCCCTGGTGGTTCCCAAACACGGAACAGAGAAGTACTTTACCTGCAACATGTGCTTGAGACCTATGCCGAACCGCAAGGAGCTGATTGCTCACTTGTCCAAGCATTCGGATCGCCAGTACGAGCAGTTGACCGCACCTGGTAAGAAACCTCCCAAGTTAAAGCCAGTCAGTTCCAATTCTGCTGGTCAACTTCCAGCAAAGTCTACTACTTCCAGCGCTGTTTCTACCACAATTGGACCCTATCGGAACGGGGACCCAGCTCACAATCACACCTGCGATTTCTGTGGGATGATTTACCGCTACAAGCCAAATATGATAAAGCACCAGGACCTTTGCAAGCGATTGCCTCCAGAGGAACGAACTTCCTACCGTTGCGTTCACTGCGGTATGACTTTCCTGGTTTTCAAAAAGTTCCAGTCTCATATTGCTGCGGAACACAACAAAAAAGAGCTCATTTGCTTCGTTTGTAACAGCAAATTTCGGTACGCAAATGAATTTTTAATTCACCATCAGAAGCATCGGATGATAAACAAAACCGCAGAAACCCACGCGATGAACCACTGGAACAAAACTGTTACCATGAAATACGGCTGCGCTGTTTGTCCAGAACAATTTGATACTAAAGCTGAGTTAGCTGATCATCGTACGACTCACTTGAAAGTTAAGATCTTCTCCTGCAGCATTTGCCGAAGGATGTTTGGCAATTCTCAGGCGCTTAAGGAACACATGAGCGAGGACCACTCTCCGGAATTGGACCCTAATATTTCGGCGTTGGACTTTCTAGACCAGAGTAATGAACTTCCGAACACCAGTAACTGGTCGGTTAACACAGATCCAGGAGCTCGAAGTACTGAGTGCACTGTTTGTGGAAAAGTATTCGCGAATTATCCGAATCTACGGAGACACATCAGATCGGTTCATGCTGGTGATGATAGATTCAATTGTTCCAAGTGTTCCAAGACGTTTACCAGCGAAGTGGAACTTGCTGAACACAATGAGAACGCGCATACTGAGGCTACCCATCGTTGCAAGTTCTGTAAGAAAAAGTTCTCCAATAATCGTGCTCTAGAGTCGCATCAGCAGACCGCTCATGGTGTCAATGATATTAATTTGGCTTGCGATATTTGTGGCAAGCAATTTGGAAATGAAACTTCGTTGAAAATTCATCGAGGACATCATTTCCGACGCGATTCAAGGCTCAGTATTCGGAACATGCCGCATCCTATGGATCAGGTTCAGGTTGAGATGAACGAATCAGTGGAGATTGTTTCACCTAGATCTGGTCGGAAGAAATCTACTCACCGAAGGTCGTCTTCGCCGAAGACTTCGGAATTAAAGTGTCAAGTTTGCGATGACAAATTCTCAGATGTTCATGATCTGAGGAAGCATTTGTGGGATGTACATTGCGCGAAGAACAAATCTGAAAAATCTTTTATGGAAGAAAACTCACTGCAGTGCGAACTTTGTACCAACGTTTTGCCGGATGAAAAGAGTCTAGAGGAACACATGAACTGGCACAAAGACAATCCTATTTTGTCGGATGGATTGCCGAGGGCTGTAGATATTTCTTGCGATGTTTGTGGGAAATTTTACAGCTCGATGAAAGCATTGTGGAAGCACAAGAAGCTGCACAGTAAAACTGGAGTTACTATGAAATTTTCCTCGGTTAAAAAAGCTGCGCTTTCGCAGTTCCCCTGTCCAGTTTGTAGGAAAGTATTTGGGAACGAAACTTCAATGAAGAAACACAAAGCGGCTGCGCATTACGCGCGACGCACCATTGCTGCGCCTATTGTTACGACAAAGGTGGCGCGCAAGTCGATTAATGAAGGTGAGGTTAAGCCCAAGAGACCTAAATTAGATTTTGATATTATTCGCAAGGCTTACAATCTTGAACCGAGCGGTTACGCCGCTGGTGGAAGTAATAGTAATAATAATAGTAATAGTACTAGTACTAGTAATAGTAGTAAAAAACCGGTTACTTGTGGAATTTGCAAAAAATTATTGCCAAGTATGAGCTCGCTGTACAAACACCGGCAAAATGTCCATAAAAATTTTGACAAATCGTTGGATAACAACGAAGATAACAGTAGAAACGACTCAATTTCTAGAAACGACGAAGAAAATCCCGGAAAATCTCGGGTTCCTTGTACCGAGTGTGACAAAGAATTTTCTACCTTGTCGAATATGAAGCAACATTTGACAAAAGTCCACGGTAACGGGAACAAGTACCACTGCAGCGCTGATGGGTGCAATCAGTACTTCAACTCGCCCTTGGCTAAGCAGTTACATGAAAAAGCGCACATGAATGTTCTATATAGGTGCGCTATCTGTGCGCGTCATATGTTCCAACGCAGTGCGATGATTCAGCACCTTGCTACTGAGCATAAAGGTCAATACTCGTCTAGTGTTGAAAAAAGCCTTTATAAAAAAACTGACTTGAGCAATTACCAAGTTCATGGAGCTGAAGGACGTGTCTGTCCAGTTTGTAATGTTACTTACCCTAATATTAAAGCCATGAAGATTCACTACGTTAAAATTCATGAAAATAGTTAA
- Protein Sequence
- MPAIKNEPLDIEIYEDNIEIVEMSEDELNHELPNDKINPSEIAIRASHRMDISLHNSAAEPTDDEEDLDCNIDVESINENETESELLLNPMALGANKNMEPDSTQKFNVRAVRKKVRRGPHTHFRGPRTFKRRCPDCQHVLHSKSSYARHINRYHRDGPTAELSNSIPNSQHNGTPYPSEDAQSAAEEIEDVEDELVSLEKDAPLTQVQESIISQLKTFSCYACQQSFNDRRSTLNHIRQHMPDLRPYTCIACLTEFPDRSIYKLHCGASFECAMKIALVVPKHGTEKYFTCNMCLRPMPNRKELIAHLSKHSDRQYEQLTAPGKKPPKLKPVSSNSAGQLPAKSTTSSAVSTTIGPYRNGDPAHNHTCDFCGMIYRYKPNMIKHQDLCKRLPPEERTSYRCVHCGMTFLVFKKFQSHIAAEHNKKELICFVCNSKFRYANEFLIHHQKHRMINKTAETHAMNHWNKTVTMKYGCAVCPEQFDTKAELADHRTTHLKVKIFSCSICRRMFGNSQALKEHMSEDHSPELDPNISALDFLDQSNELPNTSNWSVNTDPGARSTECTVCGKVFANYPNLRRHIRSVHAGDDRFNCSKCSKTFTSEVELAEHNENAHTEATHRCKFCKKKFSNNRALESHQQTAHGVNDINLACDICGKQFGNETSLKIHRGHHFRRDSRLSIRNMPHPMDQVQVEMNESVEIVSPRSGRKKSTHRRSSSPKTSELKCQVCDDKFSDVHDLRKHLWDVHCAKNKSEKSFMEENSLQCELCTNVLPDEKSLEEHMNWHKDNPILSDGLPRAVDISCDVCGKFYSSMKALWKHKKLHSKTGVTMKFSSVKKAALSQFPCPVCRKVFGNETSMKKHKAAAHYARRTIAAPIVTTKVARKSINEGEVKPKRPKLDFDIIRKAYNLEPSGYAAGGSNSNNNSNSTSTSNSSKKPVTCGICKKLLPSMSSLYKHRQNVHKNFDKSLDNNEDNSRNDSISRNDEENPGKSRVPCTECDKEFSTLSNMKQHLTKVHGNGNKYHCSADGCNQYFNSPLAKQLHEKAHMNVLYRCAICARHMFQRSAMIQHLATEHKGQYSSSVEKSLYKKTDLSNYQVHGAEGRVCPVCNVTYPNIKAMKIHYVKIHENS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00380546;
- 90% Identity
- iTF_00379076;
- 80% Identity
- -