Ccon009312.1
Basic Information
- Insect
- Cotesia congregata
- Gene Symbol
- retn
- Assembly
- None
- Location
- contig:19246695-19252468[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.7e-20 7.2e-17 62.3 0.0 14 89 3 76 1 76 0.94 2 2 2.9 1.2e+04 -2.6 0.0 17 38 220 243 195 251 0.65
Sequence Information
- Coding Sequence
- ATGTATGCAAAAGGGGGAACTCCAATCAATCGATTACCTATTATGGCAAAGTCTGTTCTTGACCTGTACGAACTATATAATTTAGTGATTGCCCGAGGTGGTTTAGTAGACGTAATAAACAAAAAATTATGGCAAGAAATTATAAAAGGCTTACACCTGCCCTCGAGTATTACTTCTGCAGCGTTTACTTTACGTACACAGTACATGAAATATTTATACCCGTACGAGTGCGAGAAGCGACGACTATCGACACCAGCGGAGTTGCAAGCGGCGATAGACGGGAATAGACGGGAAGGACGTCGCAGCAGTTACGGAGCCTACGGAGGAGGTAGTGGTGATAACATGGTACCACGCACCCCGAGCACACCTGGTTCATTGGCACTGCATGCACAAATGTCACCGCTATCTTTAGTATCTGCGTTGGGGCAGCACCACGGGGCTCAGGGTATTGCTAACGGCAGCGCAGCACACACACCTCTGCCATACCATCCTCATCATCCCCAACATCAGCAAGCCGCCGGGCTGATGGCGGGTGGACCGCCGGCTGATTTTGACGCTCGCGTAACAGACTATCTAAAAATGCTGCACCGAGACTTTCACCGTGGTACAGGAGCAACCTCACCTCCAATGACGCTGAAGCACCAGGGTTCCCCGGAAGGTACGCCCCCGCGCGACACAAGAGAAGCCCTGATGGAGATGTCGAAGCTGACCCTGTGGAACATGTACAACCCTTTATACGGAGGACTGGCCCAGCCGCCAGTGTCACCGCAGACCTCGAACTCGCCACACCCGCAGTCGGCGAGCCCAGAGCCGCAGAGAGAAGCCCTGGACCTGGGGCTCCGCACATCTCCAACCTCGACCTCGCCGCTCCGCCATAGCTCGCCCTCCTCCGGCGGAAGTCTCCAAGTAAAGAAAGACCGGGACTCCCACGAGCCCTCCGCACTCATCTCCCACAAACGGGCCCTCTCCGAAGACGAGGGGCCTCATGAGAAAATCCCCGCCCTCCCCGGGACTCATATCAAGATCTCGAACCGCGGGGACGGCAGGAACGGCGACAACTCCCTCGCCGTCAGCATGGAGATCAACGGAATGATGTACCAGGGTGTTCTTTACGCACAAAGCGACAACAATAATAAATCTATCAGTATGAATAATAATAACAACAAAACAAGGAGTTTAGTATCGTGA
- Protein Sequence
- MYAKGGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKRRLSTPAELQAAIDGNRREGRRSSYGAYGGGSGDNMVPRTPSTPGSLALHAQMSPLSLVSALGQHHGAQGIANGSAAHTPLPYHPHHPQHQQAAGLMAGGPPADFDARVTDYLKMLHRDFHRGTGATSPPMTLKHQGSPEGTPPRDTREALMEMSKLTLWNMYNPLYGGLAQPPVSPQTSNSPHPQSASPEPQREALDLGLRTSPTSTSPLRHSSPSSGGSLQVKKDRDSHEPSALISHKRALSEDEGPHEKIPALPGTHIKISNRGDGRNGDNSLAVSMEINGMMYQGVLYAQSDNNNKSISMNNNNNKTRSLVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00380864;
- 90% Identity
- iTF_00380089;
- 80% Identity
- -