Basic Information

Insect: Cotesia chilonis
Gene Symbol: -
Assembly: None
Location: scaffold12:2838628-2849149[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.18 6.4e+02 0.2 0.1 25 43 108 126 76 131 0.81

2 16 0.005 17 5.2 0.0 21 47 132 158 124 165 0.86

3 16 0.076 2.6e+02 1.5 0.1 21 45 160 184 155 188 0.87

4 16 2e-05 0.071 12.9 0.4 22 47 189 214 185 219 0.85

5 16 0.022 78 3.2 0.1 21 43 216 238 213 242 0.85

6 16 0.0014 5 7.0 0.6 21 43 244 266 236 277 0.83

7 16 0.41 1.4e+03 -0.9 0.1 20 41 271 292 263 304 0.72

8 16 0.13 4.7e+02 0.7 0.2 21 43 300 322 297 328 0.87

9 16 0.0062 22 4.9 0.1 21 45 328 352 313 358 0.86

10 16 0.0008 2.8 7.8 0.1 21 44 448 471 440 477 0.89

11 16 0.0017 5.8 6.8 0.2 22 44 477 499 471 503 0.87

12 16 9.1e-06 0.032 14.0 0.2 21 46 504 529 502 535 0.90

13 16 0.3 1.1e+03 -0.5 0.0 26 46 578 598 561 604 0.77

14 16 0.16 5.6e+02 0.4 1.1 13 46 602 638 599 646 0.69

15 16 0.64 2.2e+03 -1.5 0.1 26 45 679 698 672 701 0.81

16 16 0.3 1e+03 -0.4 0.0 26 44 707 725 700 732 0.82

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.18	6.4e+02	0.2	0.1	25	43	108	126	76	131	0.81
2	16	0.005	17	5.2	0.0	21	47	132	158	124	165	0.86
3	16	0.076	2.6e+02	1.5	0.1	21	45	160	184	155	188	0.87
4	16	2e-05	0.071	12.9	0.4	22	47	189	214	185	219	0.85
5	16	0.022	78	3.2	0.1	21	43	216	238	213	242	0.85
6	16	0.0014	5	7.0	0.6	21	43	244	266	236	277	0.83
7	16	0.41	1.4e+03	-0.9	0.1	20	41	271	292	263	304	0.72
8	16	0.13	4.7e+02	0.7	0.2	21	43	300	322	297	328	0.87
9	16	0.0062	22	4.9	0.1	21	45	328	352	313	358	0.86
10	16	0.0008	2.8	7.8	0.1	21	44	448	471	440	477	0.89
11	16	0.0017	5.8	6.8	0.2	22	44	477	499	471	503	0.87
12	16	9.1e-06	0.032	14.0	0.2	21	46	504	529	502	535	0.90
13	16	0.3	1.1e+03	-0.5	0.0	26	46	578	598	561	604	0.77
14	16	0.16	5.6e+02	0.4	1.1	13	46	602	638	599	646	0.69
15	16	0.64	2.2e+03	-1.5	0.1	26	45	679	698	672	701	0.81
16	16	0.3	1e+03	-0.4	0.0	26	44	707	725	700	732	0.82

Sequence Information

Coding Sequence: ATGTACTTGGAATTTCAAATTGATGAAAATGATTGTCATCCAGAATCTTATTTATTTCAATCCATAGATTTTGTAAAGCAAGAAGAAAATAATTCAATGAGTGAGGAAATTACTATTGTACCTGAGCCCGACGCCGTAAAAACCGACACTACCTTATCAGAAAATTCAATAGCAAAACGTACAAGATCCAAGCGAACTCCAAAATCTTCTCCAAAAACCACAAACCCAAAAAATAAGACTAAAAAAGTAAATCCAAAAAGTATCACCTTAAAATCAAAGAAATTTGCAAAAAGCACTTTGCAAATTGACCCGGCGGAAGTTTACACATGTGAAGTATGTTCCGCGAAATTCCAGCGAAAAGGTAATTTCAATAAACACAAATTAGTCCATACCGGCGAAAAGCCTTATGGATGCGACTTATGCTCGTTGCAATTCAATCAAAACAGTTCTCTGAAGCGACACATGCACACGCACTCGGAGGAGAAGCCTTACGCTTGCAGTATGTGTCCCTGGAAATTCCGACTGAACCATCAGTTGCAATCTCACTTGAACACCCACATGGAAGAGAAGCGCTACACGTGCGATGTCTGTTCCAAAAAATTCCGGCAGAAACACAGCTTGAGAAGACATCTTGGTATCCACTTCAACGAAAGACCTTTTTCTTGCGACATTTGTTTCAGGAGCTTTCGAGAAAAGACTCAAATGAAAATCCACAAGCGAATCCACTCCGGAGAGCAACCCTACGCTTGCGAAATTTGTCCTGCGAAGTTCCGCGTAAGGGGTCTGCTGAACAGACACAGACTAGCTCATGCTGAAGAAAAACCCTATGCTTGCAATTTTTGTCCCGCGACTTTTCACTTGAAGTCTCGGTACAAAACCCACATGCTTATTCATACAGGGGAAAAACCCTACCAATGTGACGTATGTTCCGTTCAGTTCCGGCATAAGTGTTCGTTGAATAAACACACTTTGATTCACACCGGAGAAAAACCTTACACTTGCCAGGTTTGCTTGAAGCAATTTCGCGAGAAAGGGACTCTGGATAAACATATGGTTGTTCATATGGAAGCAAATGATCTCCAAGAAGTTCCAACGGAAGAAACTCCAAAAAATGAATCTATGTGGAAAACATTCAAGTGCGATAAATGCGCAATGGAATTTGTCAATGAAAGTTCTCTAGCAACTCACTCAAAAAAATATAAATTTAACTGCGACGTCTGTCCAAAGTGTTTTATATCAAGACAAGGATTGTGGTACCACCTGAAATCGTTCTCTTGTACCCTGTGTGCCTACAAAACTCGGTACAAAAGTTCCTTGAACAGACACGCTCGTGTTCATACCAGAGAGAAGCCTTTTGCGTGTGACCTCTGTTCCGCGACCTTCCGGGAACAAGGTCACTTGAAGAGACACAGTCGGATTCATACTGGAGAAAAGCGCTACACCTGTGATGTCTGTTCCGCCAAGTTCAGGGAGAAGAGCACCTTGAGGCAGCACATTATTATTCACACTGGGGAAAAACCCTACACTTGTTCTGTTTGTGCGGCTAACTTTAGACAGCAGAATCATCTGGATAGACATATGGTCATCCACAATGGAGAAAAAAGTTATGCTTGTCAAATTTGTTCCTTGGAGTTCCATGGATTGATGACCGGCCAGAAGCACCTGGTAAAGAGAAGATGGAAGCGTCCGCGTAGCCAAAGAATAAAGAAGGATTATTATCCAAAAAATTGGGTTTGTGAAATTTGCTCTGCTAAATTCGCTTTCAAAAGTGGTCTAGCAAGACACGTGGTCTTGCACACGGACGAGCGTCCTTACAGCCACAAAAGGAGCCACCGTCAGCCGAAGCCTTTCATCTGCAAGATTTGTAAGTCCAGACATCATACAGATCTTGGTTTGAGACTACACATGCGGATCCACACTCACAAATTTCCTTTTACTTGCGTAACTTGTTTGATGACTTTTAACAAAAGGTTTCACTTAGTCAATCACATCAAGAGTCATATCGACGAAAAAAATTCTAAGAAAAAAATTTTTACTTGCGAAATTTGCTCCTGGAAATGCAATAGGAAGTTCCAGTTGACCAAACACATGGAAACTCATGCTGGAGAAATTCTTTTCACTTGTGATGTATGTTCTGCGAAATTTCGATACAAAACGTTGCTGACTGCTCACATGGGATTTCATAAAACTGAAAAATTTAAGTCGGCTCAAGAGTTGAATCAGCAAAATGAGTTAAAATTTTAA
Protein Sequence: MYLEFQIDENDCHPESYLFQSIDFVKQEENNSMSEEITIVPEPDAVKTDTTLSENSIAKRTRSKRTPKSSPKTTNPKNKTKKVNPKSITLKSKKFAKSTLQIDPAEVYTCEVCSAKFQRKGNFNKHKLVHTGEKPYGCDLCSLQFNQNSSLKRHMHTHSEEKPYACSMCPWKFRLNHQLQSHLNTHMEEKRYTCDVCSKKFRQKHSLRRHLGIHFNERPFSCDICFRSFREKTQMKIHKRIHSGEQPYACEICPAKFRVRGLLNRHRLAHAEEKPYACNFCPATFHLKSRYKTHMLIHTGEKPYQCDVCSVQFRHKCSLNKHTLIHTGEKPYTCQVCLKQFREKGTLDKHMVVHMEANDLQEVPTEETPKNESMWKTFKCDKCAMEFVNESSLATHSKKYKFNCDVCPKCFISRQGLWYHLKSFSCTLCAYKTRYKSSLNRHARVHTREKPFACDLCSATFREQGHLKRHSRIHTGEKRYTCDVCSAKFREKSTLRQHIIIHTGEKPYTCSVCAANFRQQNHLDRHMVIHNGEKSYACQICSLEFHGLMTGQKHLVKRRWKRPRSQRIKKDYYPKNWVCEICSAKFAFKSGLARHVVLHTDERPYSHKRSHRQPKPFICKICKSRHHTDLGLRLHMRIHTHKFPFTCVTCLMTFNKRFHLVNHIKSHIDEKNSKKKIFTCEICSWKCNRKFQLTKHMETHAGEILFTCDVCSAKFRYKTLLTAHMGFHKTEKFKSAQELNQQNELKF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00378203;
90% Identity: iTF_00378203;
80% Identity: iTF_00378203;