Cchi005461.1
Basic Information
- Insect
- Cotesia chilonis
- Gene Symbol
- -
- Assembly
- None
- Location
- scaffold12:1634706-1640031[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 1.1 3.7e+03 -2.2 0.1 26 44 111 129 107 133 0.84 2 18 0.0014 4.8 7.0 0.2 14 50 144 180 139 184 0.85 3 18 0.65 2.3e+03 -1.5 0.1 27 44 186 203 180 207 0.87 4 18 0.0002 0.69 9.7 0.5 21 52 208 239 200 241 0.90 5 18 0.07 2.4e+02 1.6 0.1 20 49 235 264 232 267 0.78 6 18 0.018 62 3.5 0.2 21 45 264 288 256 291 0.88 7 18 1.8e-06 0.0063 16.3 0.2 21 52 292 323 288 325 0.85 8 18 0.00013 0.45 10.3 0.1 21 45 348 372 339 378 0.86 9 18 0.0036 13 5.7 0.5 18 45 385 412 376 420 0.78 10 18 0.027 94 2.9 0.1 21 51 443 473 427 476 0.87 11 18 0.035 1.2e+02 2.5 0.1 21 47 471 497 467 502 0.84 12 18 0.01 36 4.2 0.1 21 45 499 523 494 530 0.83 13 18 0.019 66 3.4 0.1 21 46 527 552 523 558 0.85 14 18 0.00061 2.1 8.2 0.1 21 46 555 580 552 585 0.90 15 18 0.34 1.2e+03 -0.6 0.0 26 44 588 606 581 610 0.87 16 18 0.014 51 3.8 0.0 21 46 702 727 697 734 0.82 17 18 0.1 3.5e+02 1.1 0.1 22 45 731 754 725 757 0.84 18 18 0.0021 7.4 6.4 0.1 21 43 758 780 754 782 0.93
Sequence Information
- Coding Sequence
- ATGAATGCAGATTCTTTATCGTTTGAAACTGTAGTTCTGAAAGTTGAAAACAGTGACAAGGACTGGCAAGTAGGAGATAATTTTGACAGTCAAGGATTCAAGGATTGTAATTTTGATTATCCAATAGACATTGACGACGTAAAACTGGAGAAACTTGAAGATTCTCCAGAAGACATTGAAGCACCTGATTTTATGAAAAAAAATGTGAATAGTACTTCTTTAAAAGAAGAATTATTCCTTGATAATAATCAAAGTTCATCGATTGCAATGAAGAAGAAAAATGAAATTAAAACTTTGCATGAAAATTCAGGAAAAAATATAAAAAATTACACCTGCGATTATTGTCTAGCGACTTTTGATAAAAAGTCAATAATTCGGACGCATATTAAGACTCATCAAGCAGACTTGTTCCGTGAAAAGTCTCAGAACAAACCCCTAGAAATAGAGTCGGAAGAAAAACCATATTCTTGTGACGTCTGTCCTTCAAAGTTCCGTTTCGAAAGATATTTAAAACAGCACAAGCGAGTGATCCACACAGAAAAAAAGCGTTTCCCTTGCGACAGTTGTTCTTCGGCATTCCGAACAAGAACCCACTTGAAGAGACACATGGTTTGTCACACGGGAGAACAGCCCTACTCTTGCGACATCTGTAGGACCCAGTTCCGGCGAAGAGGTAGCCTCAAAAAACATATGTCAATTCACAAAGAAGAAAAACCTTACCAGTGTAATATTTGTTCGTTGAAATTCCGGCTCAGAAATTACTTGAGCAGTCATGTTAGAATCCACTCGACAGAGAAACCTTTTGCTTGCAGCGTTTGTTCCTCCCAGTTCCGCCACAGAAGCACTTTAAACATGCACCTCAAGAGCCACGAGCAAGAGGAACCTTGTTTGTGCGGAATCTGCTCCGCAAAGTTTAGGAACAAGAAGAATCTTAGAGAACATATGAGGATTCACGTTGGGAACAAACCTCATAAGTGTGGACTTTGTTCTTCCAGGTTCTTGAAGAAAAGTCTTTTGGAAAAACACATGCGGGTACACACTAAGGAACGCCCGTTTTTATGTAACGTTTGTTCCGCTGATTTCCGGCAGAAAAGAGCTTTGGATCAACATATGAAACCTAAATTGCGTCGAAAAGTTCCTAGACGTAAGCCAAAGACCGAAAACGAACGACAGTATGCATGTACCTCTTGTTCCAGCACGTTCCGGGAAAAGTGGAACCTGAACCGGCACATGCAGAGCCACGAAGCGAAAACATTTATCTGCGACGTGTGTTCCGCAAAATTCGGACGGAAAAGCCACCTGGAAGGTCACATGAAAATCCACACCGGCGAGAAGCCGTACAGCTGCACCGTTTGTCCGGAGAAGTTCCGCAAGAGAACGACCCTGAACCAGCACATGAGGATCCACACTGGAGAGAAGCCCTTCCAGTGCGACGTCTGTTCGACGCGGTTCCGGCAAAAGGGCCAGGTGACTGTTCACATGCGGATCCACACCGGGGAAAAGCCCTACACTTGCAGTGTCTGCTCCTCCAAGTTCCGGGAACGGGGCACTTTGTCCAGTCACATGCTTGTTCACACCGGGGAAAAACCTTATGCCTGTCAAATCTGTCCGATGAAGTTCCGGGAGAAGAATCACTTGAAGTCCCACGTTCTTATCCATACTGGAGAAAAACCCTACGGCTGCAATATTTGCTCCTCTAAATTCAGACAGAAGTGCACGCTTGTCAAACACTTAAGGATACACAAAGGAGGAAAACTTCACACCTGTTCTGTTTGTTCGACCATTTTTTCTAAAAAAGCTACGCTTACTAAACACATGCTCACTCACACTCCCGATGAACTTTTGATGTTTGAGATATCAAAAAAGTACGAGTGTGATTTTTGCAAGTTAAAATTTTCTCATAAAAACGCTCTACTTGTTCACGTCAACAAACATTTGACCACAAAATATAAATGTGAGATCTGTTCAAAAACTTACATCTCAAAAGAAGGCCTGACCCTTCACACAGCAAGGCATACAGGCGACATGCCCTACGAGTGTGAAATTTGTGCTTCTAAATTCGGGGTAAAATTTACTTACGACAATCACATGCGAATCCACAACGGCGAAAAGCCCTTTGCTTGTGAGGTTTGTTTCTCGAAATTCCGCGAAAAAAGCCAGCTGGCCGTTCACCAGAGGATTCACTCAGGGGACAAGCCCTACGCTTGTCACATTTGTTCTGTCAAGTTTCGTCACAAAGGGAGCTTGAATGCTCACATTAGAATTCACACCGACGAGCGGCCTTTCAGTTGCGAAGAATGCTCCGCGAAATTCCGGGATTCTTCGACGCTAAAGCGGCACAAGCGAAGATAA
- Protein Sequence
- MNADSLSFETVVLKVENSDKDWQVGDNFDSQGFKDCNFDYPIDIDDVKLEKLEDSPEDIEAPDFMKKNVNSTSLKEELFLDNNQSSSIAMKKKNEIKTLHENSGKNIKNYTCDYCLATFDKKSIIRTHIKTHQADLFREKSQNKPLEIESEEKPYSCDVCPSKFRFERYLKQHKRVIHTEKKRFPCDSCSSAFRTRTHLKRHMVCHTGEQPYSCDICRTQFRRRGSLKKHMSIHKEEKPYQCNICSLKFRLRNYLSSHVRIHSTEKPFACSVCSSQFRHRSTLNMHLKSHEQEEPCLCGICSAKFRNKKNLREHMRIHVGNKPHKCGLCSSRFLKKSLLEKHMRVHTKERPFLCNVCSADFRQKRALDQHMKPKLRRKVPRRKPKTENERQYACTSCSSTFREKWNLNRHMQSHEAKTFICDVCSAKFGRKSHLEGHMKIHTGEKPYSCTVCPEKFRKRTTLNQHMRIHTGEKPFQCDVCSTRFRQKGQVTVHMRIHTGEKPYTCSVCSSKFRERGTLSSHMLVHTGEKPYACQICPMKFREKNHLKSHVLIHTGEKPYGCNICSSKFRQKCTLVKHLRIHKGGKLHTCSVCSTIFSKKATLTKHMLTHTPDELLMFEISKKYECDFCKLKFSHKNALLVHVNKHLTTKYKCEICSKTYISKEGLTLHTARHTGDMPYECEICASKFGVKFTYDNHMRIHNGEKPFACEVCFSKFREKSQLAVHQRIHSGDKPYACHICSVKFRHKGSLNAHIRIHTDERPFSCEECSAKFRDSSTLKRHKRR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00378198;
- 90% Identity
- iTF_00378198;
- 80% Identity
- iTF_00378198;