Basic Information

Insect: Cotesia chilonis
Gene Symbol: -
Assembly: None
Location: scaffold12:1634706-1640031[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 23 0.012 0.93 9.7 1.1 1 23 110 132 110 132 0.98

2 23 0.00084 0.066 13.4 1.3 1 23 155 178 155 178 0.97

3 23 0.0051 0.4 10.9 4.1 1 20 184 203 184 206 0.96

4 23 2.7e-06 0.00021 21.2 1.7 1 23 212 234 212 234 0.98

5 23 0.00017 0.013 15.6 1.4 1 23 240 262 240 262 0.99

6 23 0.001 0.081 13.1 3.3 1 23 268 290 268 290 0.97

7 23 1.9e-05 0.0015 18.6 2.6 3 23 298 318 296 318 0.97

8 23 0.0038 0.3 11.3 2.9 1 23 324 346 324 346 0.98

9 23 0.0085 0.66 10.2 0.3 1 21 352 372 352 372 0.94

10 23 6.2e-05 0.0048 16.9 1.3 1 23 392 414 392 414 0.97

11 23 2.6e-05 0.002 18.1 0.7 1 23 419 441 419 441 0.98

12 23 1.5e-06 0.00011 22.1 1.5 1 23 447 469 447 469 0.98

13 23 2.3e-06 0.00018 21.4 0.8 1 23 475 497 475 497 0.99

14 23 0.00048 0.037 14.1 0.7 1 23 503 525 503 525 0.98

15 23 6.7e-05 0.0052 16.8 1.1 1 23 531 553 531 553 0.97

16 23 0.0011 0.085 13.0 3.2 3 23 561 581 559 581 0.98

17 23 1.2e-05 0.00092 19.2 2.9 1 23 587 609 587 609 0.98

18 23 0.00024 0.018 15.1 2.4 1 23 623 645 623 645 0.98

19 23 2.2e-05 0.0017 18.4 0.5 1 23 650 672 650 672 0.98

20 23 0.016 1.2 9.4 0.4 1 23 678 700 678 700 0.98

21 23 0.00016 0.012 15.7 0.5 1 23 706 728 706 728 0.97

22 23 3e-06 0.00024 21.1 2.3 1 23 734 756 734 756 0.98

23 23 3.1e-05 0.0024 17.9 1.3 1 22 762 783 762 783 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	23	0.012	0.93	9.7	1.1	1	23	110	132	110	132	0.98
2	23	0.00084	0.066	13.4	1.3	1	23	155	178	155	178	0.97
3	23	0.0051	0.4	10.9	4.1	1	20	184	203	184	206	0.96
4	23	2.7e-06	0.00021	21.2	1.7	1	23	212	234	212	234	0.98
5	23	0.00017	0.013	15.6	1.4	1	23	240	262	240	262	0.99
6	23	0.001	0.081	13.1	3.3	1	23	268	290	268	290	0.97
7	23	1.9e-05	0.0015	18.6	2.6	3	23	298	318	296	318	0.97
8	23	0.0038	0.3	11.3	2.9	1	23	324	346	324	346	0.98
9	23	0.0085	0.66	10.2	0.3	1	21	352	372	352	372	0.94
10	23	6.2e-05	0.0048	16.9	1.3	1	23	392	414	392	414	0.97
11	23	2.6e-05	0.002	18.1	0.7	1	23	419	441	419	441	0.98
12	23	1.5e-06	0.00011	22.1	1.5	1	23	447	469	447	469	0.98
13	23	2.3e-06	0.00018	21.4	0.8	1	23	475	497	475	497	0.99
14	23	0.00048	0.037	14.1	0.7	1	23	503	525	503	525	0.98
15	23	6.7e-05	0.0052	16.8	1.1	1	23	531	553	531	553	0.97
16	23	0.0011	0.085	13.0	3.2	3	23	561	581	559	581	0.98
17	23	1.2e-05	0.00092	19.2	2.9	1	23	587	609	587	609	0.98
18	23	0.00024	0.018	15.1	2.4	1	23	623	645	623	645	0.98
19	23	2.2e-05	0.0017	18.4	0.5	1	23	650	672	650	672	0.98
20	23	0.016	1.2	9.4	0.4	1	23	678	700	678	700	0.98
21	23	0.00016	0.012	15.7	0.5	1	23	706	728	706	728	0.97
22	23	3e-06	0.00024	21.1	2.3	1	23	734	756	734	756	0.98
23	23	3.1e-05	0.0024	17.9	1.3	1	22	762	783	762	783	0.95

Sequence Information

Coding Sequence: ATGAATGCAGATTCTTTATCGTTTGAAACTGTAGTTCTGAAAGTTGAAAACAGTGACAAGGACTGGCAAGTAGGAGATAATTTTGACAGTCAAGGATTCAAGGATTGTAATTTTGATTATCCAATAGACATTGACGACGTAAAACTGGAGAAACTTGAAGATTCTCCAGAAGACATTGAAGCACCTGATTTTATGAAAAAAAATGTGAATAGTACTTCTTTAAAAGAAGAATTATTCCTTGATAATAATCAAAGTTCATCGATTGCAATGAAGAAGAAAAATGAAATTAAAACTTTGCATGAAAATTCAGGAAAAAATATAAAAAATTACACCTGCGATTATTGTCTAGCGACTTTTGATAAAAAGTCAATAATTCGGACGCATATTAAGACTCATCAAGCAGACTTGTTCCGTGAAAAGTCTCAGAACAAACCCCTAGAAATAGAGTCGGAAGAAAAACCATATTCTTGTGACGTCTGTCCTTCAAAGTTCCGTTTCGAAAGATATTTAAAACAGCACAAGCGAGTGATCCACACAGAAAAAAAGCGTTTCCCTTGCGACAGTTGTTCTTCGGCATTCCGAACAAGAACCCACTTGAAGAGACACATGGTTTGTCACACGGGAGAACAGCCCTACTCTTGCGACATCTGTAGGACCCAGTTCCGGCGAAGAGGTAGCCTCAAAAAACATATGTCAATTCACAAAGAAGAAAAACCTTACCAGTGTAATATTTGTTCGTTGAAATTCCGGCTCAGAAATTACTTGAGCAGTCATGTTAGAATCCACTCGACAGAGAAACCTTTTGCTTGCAGCGTTTGTTCCTCCCAGTTCCGCCACAGAAGCACTTTAAACATGCACCTCAAGAGCCACGAGCAAGAGGAACCTTGTTTGTGCGGAATCTGCTCCGCAAAGTTTAGGAACAAGAAGAATCTTAGAGAACATATGAGGATTCACGTTGGGAACAAACCTCATAAGTGTGGACTTTGTTCTTCCAGGTTCTTGAAGAAAAGTCTTTTGGAAAAACACATGCGGGTACACACTAAGGAACGCCCGTTTTTATGTAACGTTTGTTCCGCTGATTTCCGGCAGAAAAGAGCTTTGGATCAACATATGAAACCTAAATTGCGTCGAAAAGTTCCTAGACGTAAGCCAAAGACCGAAAACGAACGACAGTATGCATGTACCTCTTGTTCCAGCACGTTCCGGGAAAAGTGGAACCTGAACCGGCACATGCAGAGCCACGAAGCGAAAACATTTATCTGCGACGTGTGTTCCGCAAAATTCGGACGGAAAAGCCACCTGGAAGGTCACATGAAAATCCACACCGGCGAGAAGCCGTACAGCTGCACCGTTTGTCCGGAGAAGTTCCGCAAGAGAACGACCCTGAACCAGCACATGAGGATCCACACTGGAGAGAAGCCCTTCCAGTGCGACGTCTGTTCGACGCGGTTCCGGCAAAAGGGCCAGGTGACTGTTCACATGCGGATCCACACCGGGGAAAAGCCCTACACTTGCAGTGTCTGCTCCTCCAAGTTCCGGGAACGGGGCACTTTGTCCAGTCACATGCTTGTTCACACCGGGGAAAAACCTTATGCCTGTCAAATCTGTCCGATGAAGTTCCGGGAGAAGAATCACTTGAAGTCCCACGTTCTTATCCATACTGGAGAAAAACCCTACGGCTGCAATATTTGCTCCTCTAAATTCAGACAGAAGTGCACGCTTGTCAAACACTTAAGGATACACAAAGGAGGAAAACTTCACACCTGTTCTGTTTGTTCGACCATTTTTTCTAAAAAAGCTACGCTTACTAAACACATGCTCACTCACACTCCCGATGAACTTTTGATGTTTGAGATATCAAAAAAGTACGAGTGTGATTTTTGCAAGTTAAAATTTTCTCATAAAAACGCTCTACTTGTTCACGTCAACAAACATTTGACCACAAAATATAAATGTGAGATCTGTTCAAAAACTTACATCTCAAAAGAAGGCCTGACCCTTCACACAGCAAGGCATACAGGCGACATGCCCTACGAGTGTGAAATTTGTGCTTCTAAATTCGGGGTAAAATTTACTTACGACAATCACATGCGAATCCACAACGGCGAAAAGCCCTTTGCTTGTGAGGTTTGTTTCTCGAAATTCCGCGAAAAAAGCCAGCTGGCCGTTCACCAGAGGATTCACTCAGGGGACAAGCCCTACGCTTGTCACATTTGTTCTGTCAAGTTTCGTCACAAAGGGAGCTTGAATGCTCACATTAGAATTCACACCGACGAGCGGCCTTTCAGTTGCGAAGAATGCTCCGCGAAATTCCGGGATTCTTCGACGCTAAAGCGGCACAAGCGAAGATAA
Protein Sequence: MNADSLSFETVVLKVENSDKDWQVGDNFDSQGFKDCNFDYPIDIDDVKLEKLEDSPEDIEAPDFMKKNVNSTSLKEELFLDNNQSSSIAMKKKNEIKTLHENSGKNIKNYTCDYCLATFDKKSIIRTHIKTHQADLFREKSQNKPLEIESEEKPYSCDVCPSKFRFERYLKQHKRVIHTEKKRFPCDSCSSAFRTRTHLKRHMVCHTGEQPYSCDICRTQFRRRGSLKKHMSIHKEEKPYQCNICSLKFRLRNYLSSHVRIHSTEKPFACSVCSSQFRHRSTLNMHLKSHEQEEPCLCGICSAKFRNKKNLREHMRIHVGNKPHKCGLCSSRFLKKSLLEKHMRVHTKERPFLCNVCSADFRQKRALDQHMKPKLRRKVPRRKPKTENERQYACTSCSSTFREKWNLNRHMQSHEAKTFICDVCSAKFGRKSHLEGHMKIHTGEKPYSCTVCPEKFRKRTTLNQHMRIHTGEKPFQCDVCSTRFRQKGQVTVHMRIHTGEKPYTCSVCSSKFRERGTLSSHMLVHTGEKPYACQICPMKFREKNHLKSHVLIHTGEKPYGCNICSSKFRQKCTLVKHLRIHKGGKLHTCSVCSTIFSKKATLTKHMLTHTPDELLMFEISKKYECDFCKLKFSHKNALLVHVNKHLTTKYKCEICSKTYISKEGLTLHTARHTGDMPYECEICASKFGVKFTYDNHMRIHNGEKPFACEVCFSKFREKSQLAVHQRIHSGDKPYACHICSVKFRHKGSLNAHIRIHTDERPFSCEECSAKFRDSSTLKRHKRR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00378389;
90% Identity: iTF_00378389;
80% Identity: iTF_00378389;