Coce025747.1
Basic Information
- Insect
- Cosmorhoe ocellata
- Gene Symbol
- -
- Assembly
- GCA_963675405.1
- Location
- OY776273.1:493735-501682[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.32 4.8e+03 -1.5 0.3 26 48 175 197 167 200 0.82 2 13 8.1e-06 0.12 13.2 0.3 21 48 271 298 267 300 0.91 3 13 0.0092 1.4e+02 3.4 0.1 21 45 300 324 295 327 0.86 4 13 0.004 59 4.6 0.1 21 50 370 399 366 403 0.90 5 13 0.064 9.4e+02 0.7 0.0 26 44 432 450 421 454 0.89 6 13 0.0017 25 5.8 0.3 21 48 500 527 496 532 0.89 7 13 0.0009 13 6.7 0.0 23 44 531 552 528 556 0.92 8 13 0.0079 1.2e+02 3.6 0.0 21 48 600 627 597 630 0.89 9 13 0.15 2.2e+03 -0.5 0.0 20 46 640 666 636 672 0.73 10 13 0.039 5.8e+02 1.4 0.2 15 47 720 752 714 757 0.79 11 13 1.2e-05 0.18 12.7 0.0 21 46 754 779 751 787 0.90 12 13 0.023 3.4e+02 2.2 0.0 21 48 810 837 803 842 0.86 13 13 0.2 2.9e+03 -0.8 0.0 22 43 840 861 836 866 0.86
Sequence Information
- Coding Sequence
- ATGTCCGATGAAGAGTTGTGCAGAGTGTGCCTCGCGGAGAACAGAAGGATGTATCCGATCAGCAGCTCCCGGTATCAGGAGATGTATGAGAAACTAACGGGCGGACCGcTGTTGTCCGGAGATGGTAGACCTGACTGCCTGTGCAGCCTGTGCCTCACCATGGTGCAGAGGTGCTGGAGATTCTTCCACATGTCACAGAAGTCGGAGGAGAACCTCAACAAACTACTAGCATATGGAGTCAAGtttaCTCGTCTGTCGGTGGCTCTGGTTGATAAAGTGAATGTCCACAACCTGTCAGTCACGTCAGTCACGCACACGTCAGTATTTGACAATGTGAAGGAGGAAGCGGAAGTGGCGGTCAAACTGGAGATGTTTTCTGAAGAAGAGAAGAATATTGATGAGATTGATGATGTCCCTGCGCAAGAGTCGAACGACGAAGACTCCGAGTCAGATCCGTTGGAAGCGGTTGAAATTGTCGACGTGAAAATAGAATCCATCACAGAAACGAATGCCTCAACTTACTCCTGCGCAGTATGCCCGCGCCGCTTCAACTCTTCAAGAGAATTGGACCAACACAAAAATTGTGTTCATAAAACAAGATACCAATGTAAAAAGTGTAGTGAAGTGTTTGCAAACTCAGCTGTCCTGAAATTACATATGAAATTTCACGCTGAACAAAAATCTGTAGATAGTGATAATGTCAATGACAGTTTTATAGATTTCACCGGTGAGAAATTTGCATGTGTGCTTTGTAAGAAGACTTTCACACAGAAAGGACATTTAAAAACACATATAATGGCATTTCACACCGGGGAAAGGCCATATGCCTGCCCCATATGCGACAAGAGATTCGTGCAGAATAGTAATCTCAGAACTCATATGCGTACAGCTCATGTTAAGGAGAAACCGTTCACTTGTACCACTTGTAAGGGTGTGTGTGTTGACGAGAGCCATCTTAAGGAACATATGAGTATCCATAGCGGTGACAATCAGACCATCAATGATGGGAATGATGATAGAGTCGAAAAGCCATTTGGTTGTGGCCGGTGTGGGAAAACATTCACAGCGAAAGCCCATTTGAAATCACATGTCATGGCCATTCATACGGGAGAGCGCCCATTCGCGTGTACCATGTGTGATAAAAAGTACACGCAAAAAAGTCACCTAAGGTTACACGCGAGGTTGTCACACGTTGTGGAAAAACCATTCGCATGTCTCGATTGTGAAATGAGATTTGACAGTGAAAACGATTTGAAAAAACACTCCACAACCCATACGGATATTAAGTCATTCTCTTGTGCTATCTGCAATAAGTTATTCCTATCAGAAAACAACTTAAAGAAACATATGGTTGTACATAGTGGGACGTTGTTGCCGAGCGATGTTGAGGAGATTGAAAGAGATGAGGTGAAAGTCAAGCCGTTCCCCTGTGTGTTATGCAGCAAGAGATTCGGATGGAAATCGCATTTAAAGTCTCATATAATGGCAATCCACACAGGAGAAAGGCCATATTCCTGCTCTGTATGCGACAAGAGATTTGTACAAAGAAGTAATTTAAGATTACACGCTAAAGTAGCGCATGGGATTATTAAACCTTTGACATGCGAATTGTGTAATAAAGCGTTTAGGAAAGAAAGCAATTTGCAGAAGCATATGACTACGCATAGCGGAGAAGTGTCAATAGATACTGAAGTAGAAGATGATATGTCCAAGTCAAAGCCATTCCCTTGTGTGTTATGCAGCAAGAGATTCGGTTGGAAATCGCATTTGAAAACTCATATAATGGCGCTTCATACTGGGGAACGCCCTTTTTCATGTTCCATATGCGATAAAAAATTTGTACAAAAAAGCTATTTGAGATTTCACATGAAAACTATACACCCCGGAGACCGAGCTACCCAGATCATGCTCAACAGTGATGAGGGGAAACCATTCACTTGCAAACTTTGTTCtgttaaatttattaacaaaaccAGCTTAGAAAAGCATCGGAGACTACACACCGACGCGCCGCCATTTAAATGTATCAGATGCGATAAAAAATTCAGCACAAAAGTCGATCTAGACTCCCACAACTTAAGTCTACACGCTACTGAACTACCATATAATTGTGAGACTTGTAAATCGAGATTTGAAGATCAGAACGCGTTGAAAAAACATCAGTCAACACACACCGACGCCAAACCGTTGTCTTGTGAGACTTGCAACAGAACTTTCCTAGCTCGCAGTGCTTTAAGAAGACATATGGTCATTCATAGCGATGAAAAACCATTCTCGTGCAAGATATgcaaaaaatctttcaaacAGGACAGAGTTTTGAGAAAACATATGCAAATACACACCGAGGAGAAGAAATTTGGATGTGATGTGTGCGATAGGAAATTTTATCAACGTGGGAACTTAATCAGTCATATGAGGATTCATTCTGGAGAGAAACCCTTTGTGTGTGACCGATGCGGGAACAGTTTTAATCAGAAGAGTCATTTAAGAACGCATGTGCTGTTTATGCATACCACAGACAAGCCATTCTCTTGCGGGTTGTGTAATAAGAAATTCAGGTTGAAGAGTTGTCTTCGGAACCACCAGATGGTACATACTGGTGAACGACCATACCCGTGCAATAGTTGTGATAAAAAGTACTATAAGAAAGGTGAATTGAAATCTCATGTCTTGAAAATGCATTCTTGA
- Protein Sequence
- MSDEELCRVCLAENRRMYPISSSRYQEMYEKLTGGPLLSGDGRPDCLCSLCLTMVQRCWRFFHMSQKSEENLNKLLAYGVKFTRLSVALVDKVNVHNLSVTSVTHTSVFDNVKEEAEVAVKLEMFSEEEKNIDEIDDVPAQESNDEDSESDPLEAVEIVDVKIESITETNASTYSCAVCPRRFNSSRELDQHKNCVHKTRYQCKKCSEVFANSAVLKLHMKFHAEQKSVDSDNVNDSFIDFTGEKFACVLCKKTFTQKGHLKTHIMAFHTGERPYACPICDKRFVQNSNLRTHMRTAHVKEKPFTCTTCKGVCVDESHLKEHMSIHSGDNQTINDGNDDRVEKPFGCGRCGKTFTAKAHLKSHVMAIHTGERPFACTMCDKKYTQKSHLRLHARLSHVVEKPFACLDCEMRFDSENDLKKHSTTHTDIKSFSCAICNKLFLSENNLKKHMVVHSGTLLPSDVEEIERDEVKVKPFPCVLCSKRFGWKSHLKSHIMAIHTGERPYSCSVCDKRFVQRSNLRLHAKVAHGIIKPLTCELCNKAFRKESNLQKHMTTHSGEVSIDTEVEDDMSKSKPFPCVLCSKRFGWKSHLKTHIMALHTGERPFSCSICDKKFVQKSYLRFHMKTIHPGDRATQIMLNSDEGKPFTCKLCSVKFINKTSLEKHRRLHTDAPPFKCIRCDKKFSTKVDLDSHNLSLHATELPYNCETCKSRFEDQNALKKHQSTHTDAKPLSCETCNRTFLARSALRRHMVIHSDEKPFSCKICKKSFKQDRVLRKHMQIHTEEKKFGCDVCDRKFYQRGNLISHMRIHSGEKPFVCDRCGNSFNQKSHLRTHVLFMHTTDKPFSCGLCNKKFRLKSCLRNHQMVHTGERPYPCNSCDKKYYKKGELKSHVLKMHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00377291;
- 90% Identity
- iTF_00377291;
- 80% Identity
- iTF_00377291;