Coce021906.1
Basic Information
- Insect
- Cosmorhoe ocellata
- Gene Symbol
- mbr-1
- Assembly
- GCA_963675405.1
- Location
- OY776266.1:5988720-5994363[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-14 1e-11 45.1 0.0 1 38 78 116 78 120 0.94 2 2 1.1e-18 1e-15 57.9 0.0 1 43 285 328 285 330 0.95
Sequence Information
- Coding Sequence
- ATGGTGTGGATACCTAATTATTTCTACTACACTTATTACGATTATTGGAGGCTAGCGGAGGACAAGGCGGCCCCCTCGTCTCCACTCCTGGCGGAACAACCCCTCGACCTGAGCGCCAAGTCCACTTCTAGCACCAGCGGCACCCCGCCACCTGATGCCAAGAACTTGGATAATAGATTGAAACGCGCAACCTTAGATGGACCCTGCAACAGTATAACGAAGCGAAACTACACAGAAGATGAGCTACATTCCGCTCTCCGAGACATCCAGACAGGGAAACTTGGCACTCGACGAGCAGCCGTTGTCTACGGCATCCCAAGGTCCACGCTTCGAAACAAGGTCAACAAATTCGGTCTCACACCAGACCAGCACGAGTCAGAGCCTGACAGCGACCAGGATCGAACTGAATCCCCACCGTCGGTGATACTAAAGATCCCCACATTCCCCCCACCGGATGATAAAAGCCCATCGCCAGCCACACCAGTTACAACTCCTATAACGCCCATGACTCCAAACTTCCAGGGTTCACATAATCCTTGCCAAACACCCTTACTGCTCCCACCTTCGGTGTTCGCCGATCCACCGACCCAGCACCTTTTTACGTCGCTCAGTGACGTTATAGCTAAAAGCATCAGCCAAAAGTTCCAGCAGCCTTTAGACAGGCCGCAAGCAGACATGCAGCAGTACATGCGAGCTCCGGACCGACACGTGTCAGTTATCAAAACTCCCCCTGATAACCATCATAGGAACTACCAAATGCCGAGTAATTCTAGAGGCGTGTCCAACAATAATGGACAAGCGGCTGCAGGGGGGAAGGGCACCCGTCCCAAGCGAGGAAAATACAGAAACTACGATAGAGATAGTCTAGTGGAAGCTGTGAAGGCGGTCCAGAGAGGTGAGATGTCGGTGCACAGAGCTGGCTCCTACTACGGAGTGCCGCATTCGACGCTCGAGTATAAGGTGAAGGAACGCCACCTAATGCGTCCGCGGAAACGCGAGCCTAAACCTCAACCGGACGTGAAACCGCAGCCTCCGAAGCCACAACCCCCCAAACCAGCGACAAAGCCCTTCTCGAACGGGCTGAACGGTCCAGAAACCGGGGGATACCCCCCAGGGTATCCATTCTGGCCTGGAGCGAGCTTCGCGCCGCACCCTGCTCCAGACCTATACGCGTCTCATATGATGCGGCGGTTGCGTGAGGAAGCGCCTCCTCCAGCTAACGGATCCTTCCTCGAAGGTATTATCAGGTCTAGCTTGGAGCGGCCCGGCGCGGCGCTGCTGCAGCGGCTGACGGAGCCGCGGGTTCCTGGAGTTCCCCAAGACTCTCCTAGCTTGCTGCGGAGACTGGCAGGGACCGCGTCTCCGGAAGACGGGCCTCCAGCCAGACGGCCGCGCTTGGACAGTTCCGACAGGCAACTGGCTGCGGAGATGCGCGAGGCTGTTCAGCGACTGCGCGCGGATAAGCTGCGGCCGCGCAACGGGACCCCTACCCCGCCGCTCTCGCCCCCGCCGGCGCCCCCGGCCCCCCCAGACCGCGCCTAG
- Protein Sequence
- MVWIPNYFYYTYYDYWRLAEDKAAPSSPLLAEQPLDLSAKSTSSTSGTPPPDAKNLDNRLKRATLDGPCNSITKRNYTEDELHSALRDIQTGKLGTRRAAVVYGIPRSTLRNKVNKFGLTPDQHESEPDSDQDRTESPPSVILKIPTFPPPDDKSPSPATPVTTPITPMTPNFQGSHNPCQTPLLLPPSVFADPPTQHLFTSLSDVIAKSISQKFQQPLDRPQADMQQYMRAPDRHVSVIKTPPDNHHRNYQMPSNSRGVSNNNGQAAAGGKGTRPKRGKYRNYDRDSLVEAVKAVQRGEMSVHRAGSYYGVPHSTLEYKVKERHLMRPRKREPKPQPDVKPQPPKPQPPKPATKPFSNGLNGPETGGYPPGYPFWPGASFAPHPAPDLYASHMMRRLREEAPPPANGSFLEGIIRSSLERPGAALLQRLTEPRVPGVPQDSPSLLRRLAGTASPEDGPPARRPRLDSSDRQLAAEMREAVQRLRADKLRPRNGTPTPPLSPPPAPPAPPDRA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00663005;
- 90% Identity
- iTF_01171387;
- 80% Identity
- -