Csor012022.1
Basic Information
- Insect
- Cosmopolites sordidus
- Gene Symbol
- TFDP1
- Assembly
- GCA_031761425.1
- Location
- JARFXV010000297.1:305968-328267[-]
Transcription Factor Domain
- TF Family
- E2F
- Domain
- E2F_TDP domain
- PFAM
- PF02319
- TF Group
- Helix-turn-helix
- Description
- This family contains the transcription factor E2F and its dimerisation partners TDP1 and TDP2, which stimulate E2F-dependent transcription. E2F binds to DNA as a homodimer or as a heterodimer in association with TDP1/2, the heterodimer having increased binding efficiency. The crystal structure of an E2F4-DP2-DNA complex shows that the DNA-binding domains of the E2F and DP proteins both have a fold related to the winged-helix DNA-binding motif. Recognition of the central c/gGCGCg/c sequence of the consensus DNA-binding site is symmetric, and amino acids that contact these bases are conserved among all known E2F and DP proteins.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.4e-23 8.4e-19 68.6 0.2 3 65 159 239 157 239 0.97
Sequence Information
- Coding Sequence
- ATGTTTGTGTTACAGATGTTTATTTTAGTAGCTCTGCCGCACTCCCTGGTATTTCAACCAGAGCTTGAAAAAGCAAATGCAACAACAgcaTTTACAACTACTATAGGACAACCGCAACAAATTATCAGGACCATAACATCGAATTCGAAAATTGTAACGAAACAAGTGCCCATACATGTCAATACTTCCATGGGTTCCATTCCAAAAGGTACAAAAACAATTAGGTTAACACCTGCTCAAAtgcaaaatattaaaattgttccACAAAATCAAGCACGTGTCATGTCAATTCCTCATAGTCCAACGTCGCAAGCAATTCCTGTTATTCAGCAAGCaccaagtcaacagtaccaccAACCACAAACGGTCAAAAATATTTCACCCCCTATTTTATCAAGAAAAAGGCCAGATTCTGGAGACCACATAGAATTTGCTCCAGATAACAAACGACTCAGGAAATCAGAAAAGCTCAGTAGGGGTTTAAGGCATTTTTCAATGAAAGTATGTGAGAAAGTGAAAGAGAAAGTAACTACAACGTATAACGAAGTAGCGGATGATCTCGTACGAGAGTTTACAGCCCAACAAAGTACGGCAAATAGTCCATTGGCGGATCAGTATGATCAGAAAAATATCAGGAGACGTGTTTATGATGCTCTGAATGTTTTGATGGCTATGAACATAATATCAAAGGAAAAGAAGGAGATTAGGTGGATTGGGTTACCAACAAATTCCTTACAGgaATGTCAACAATTAGAAAAAGAAGTGCGTAAAAAAGTCACCACCATACGAGAAAAGGAAAAGCAATTTTACGAACTGATCATGAGCCAAATAGCTTTCAAAAGCCTTGCCCAAAGAAATAAGGAAACTGAAAAAATAGCAGGGCCTCCGGGGCCGAACTGCTGTATACAACTTCCTTTCATCGTtataaacacaaacaaaaaGACTGTTATTAATTGTAGCATCTCAAATGACAAGATGGACTATTTGCTTCAGTTTAGtgataaatttgaaattattgatgACTTAGAAATCTTAAAACAAATTGGAATGTTACATGGGTTGGATAATGGGAAATGTTCTAAAGAAGATTTGAACCGAATAAAAACGCTTATTCCTGAGTCTTTATGGCCATATGTAGAAAAAATAGCTTCTGGTTCAAAAGATCCCCTGGAAGAACTTCTAGAATCTCCTAATGCCAGCACGTCAGCCATGACACATATGTCGGATTTCGTCGAGACAACATTAGACGAAGAAAATTCACGTCCGTCAAGTAGTAACGATCCTCTATCGCCCTTAGCCGTTGATTATTCGGAAGATGAGGTGGATTCAGATTTGTCAAGTGATGAGTTAAACTAA
- Protein Sequence
- MFVLQMFILVALPHSLVFQPELEKANATTAFTTTIGQPQQIIRTITSNSKIVTKQVPIHVNTSMGSIPKGTKTIRLTPAQMQNIKIVPQNQARVMSIPHSPTSQAIPVIQQAPSQQYHQPQTVKNISPPILSRKRPDSGDHIEFAPDNKRLRKSEKLSRGLRHFSMKVCEKVKEKVTTTYNEVADDLVREFTAQQSTANSPLADQYDQKNIRRRVYDALNVLMAMNIISKEKKEIRWIGLPTNSLQECQQLEKEVRKKVTTIREKEKQFYELIMSQIAFKSLAQRNKETEKIAGPPGPNCCIQLPFIVINTNKKTVINCSISNDKMDYLLQFSDKFEIIDDLEILKQIGMLHGLDNGKCSKEDLNRIKTLIPESLWPYVEKIASGSKDPLEELLESPNASTSAMTHMSDFVETTLDEENSRPSSSNDPLSPLAVDYSEDEVDSDLSSDELN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01351441; iTF_01307033; iTF_01186810; iTF_01239905; iTF_00195749; iTF_01238357; iTF_01241621; iTF_01186811;
- 90% Identity
- iTF_01307033;
- 80% Identity
- -