Ctra043650.2
Basic Information
- Insect
- Cosmia trapezina
- Gene Symbol
- -
- Assembly
- GCA_905163495.1
- Location
- LR991047.1:776155-779905[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.00017 2.9 9.6 0.0 14 45 171 204 163 209 0.73 2 4 0.019 3.4e+02 3.0 0.0 20 45 289 314 282 319 0.85 3 4 7.3e-06 0.13 13.9 0.0 21 46 373 398 365 404 0.90 4 4 0.061 1.1e+03 1.4 0.3 20 44 457 481 451 488 0.79
Sequence Information
- Coding Sequence
- ATGGCGAGcagaataatatttgaagatgAAATTGATGaccaaaatttaaataaaactgacAAACCGAAACTAACTGAAGAAAtgacaataaaaaaagaagatcCATCGGATGAGGGTATCTGCAGTCCAGATCCTAGTCCAGGAAAAGAACACCAGGATTTTACAGAAACAAATTCTGAAACAGTTAATACTACTGATCCTAGTAACAACAATATTGAAATAGAAAATGTAATCTTTCtcggcagtcgggtaaaaaaaagtaatgaagTTCCAATTGAGCAATCTGAGGGTAATATTGCTCAAGGTGAGGGTAatattatcatggttggagGGGGTAAAGTTAAGAGAAAAAATAAAAGCGAGCTGGAGTTGCTTGGTATAGATATAAAGGAGAATTTTGAAGATTTAGATGCTGAATATGATGTGTTTGGAgatgaaagtaaaatatttagaaAGTATAAGTTGAGGAAAACTGAGCAACctATCTCGTATAAGGAGCCAGAGGACATCAAACCCAAGCGCCGCATCAGTACAGATGATGAAACGGATTTGACCTGTCCCGTTTGCTATCAAGAGTTTGAAAACAAGGTAGCGTTACTGAACCACCTCCGAATTCACAACAAAACTGTACACGAATACACCTGCTCACTATGCTCCAAGAAATTCGAGAAAAATGCAGACTTAATTGCCCACAGAGAACAACATAGCTCAGAGTCTTTTCTCTGCCATGAATGCAAACTAGCATTCTCAAACTACTGCGATTATTTACTACACAACTATGAGCATTTGAGCCAACCCCATTTCAAATGCACAGAATGTGGATTGCGCTATCGAAAATCATTCTACAAAAAACACACTATGACACATTTTGAAAACCCACTGTCCTGCGACTTATGCTCTTTCGTTGCCAACGGCGAATACAAACTACGGGCTCATATAAATCAGCATAAATACATGGGACTTGTCTGCGTAGAGTGTGGAAAAGTGTGCAAATGCAAAAAAGATTATGAATATCATATGAGCATGCATACTGGGGTTAAGAGGATCCAGTGTCTTTACTGCGGAGCATGTTTTCGCAACCATAGCGCGAGGGAAGTGCACACTAGAATACACACAGGTGAAAAACCTTTTACTTGTGACATATGTGGGCTCAAACTCAGGCAATGGACAGATTTGAAACGACATAAAGAAACTCATGGCACTGAGAAAAAGTACGTTTGCGATTTGTGTGGAAATAAATTCTTGCACAAATATTATCTTGCGGTTCATATGCGGTctcatacaaataagtatttGTATGAGTGTCCAGAGTGTGATGCTAAGTTTGGCAGTGTAACTGGGTTGAAGACTCATACGATGTTTAAGCATACGAGTGAGCGCCCTGTTGAGTGTACGCTTtgtgataaaaagtttattaataataacCAGTATCGGAAACATTGTAGGGCGAAGTATCATTTAAGAAATGTGTATGGGAATAATACTGATAAAAAGAAAGATGAATGA
- Protein Sequence
- MASRIIFEDEIDDQNLNKTDKPKLTEEMTIKKEDPSDEGICSPDPSPGKEHQDFTETNSETVNTTDPSNNNIEIENVIFLGSRVKKSNEVPIEQSEGNIAQGEGNIIMVGGGKVKRKNKSELELLGIDIKENFEDLDAEYDVFGDESKIFRKYKLRKTEQPISYKEPEDIKPKRRISTDDETDLTCPVCYQEFENKVALLNHLRIHNKTVHEYTCSLCSKKFEKNADLIAHREQHSSESFLCHECKLAFSNYCDYLLHNYEHLSQPHFKCTECGLRYRKSFYKKHTMTHFENPLSCDLCSFVANGEYKLRAHINQHKYMGLVCVECGKVCKCKKDYEYHMSMHTGVKRIQCLYCGACFRNHSAREVHTRIHTGEKPFTCDICGLKLRQWTDLKRHKETHGTEKKYVCDLCGNKFLHKYYLAVHMRSHTNKYLYECPECDAKFGSVTGLKTHTMFKHTSERPVECTLCDKKFINNNQYRKHCRAKYHLRNVYGNNTDKKKDE*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00623438;
- 90% Identity
- iTF_00374518;
- 80% Identity
- -