Ctra038481.1
Basic Information
- Insect
- Cosmia trapezina
- Gene Symbol
- STIPL1
- Assembly
- GCA_905163495.1
- Location
- LR991042.1:7356651-7367075[-]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.9e-58 3.3e-54 185.9 7.1 13 275 6 250 4 250 0.97 2 2 0.8 1.4e+04 -3.1 0.0 178 188 282 292 257 302 0.51
Sequence Information
- Coding Sequence
- ATGGCATTTAGCTTGGACTCCTACCCCGTAGAATACGAGATGTTTGGCTTAGGCACCATTGCGGGTAACATCGTGAGCCCGCTGTTAAGTTCCTTACTCGCTACCTGGGAGCCTCTCGCGGCCCCCGACGAGCACATCCCTACCTTCCAGAAATGGAGGAAGTTGCTGACAGAAGAGGCGTACAACAGTCTGCTGTGGCAACACTTTGTGCCGCAACTTACTGCGGCTGCTGAAACCTGGAACCCGCGCATGCCAACTCCAATGCTCCGCGCTGTGTCCGCATGGCAGGCCGCATCGCCTCCCTGGCTGTCCCGAGCCTGCGTCACACGCTGCGTGGTACCACGAGTACTAGCGGCCGTTAGGGCCTGGGACCCCACCAACGACACGCAGCCGCTGCACCAGTGGGTGCTGCCCTGGCATGATATGGCAGGAGAAGCCTTAGCAAGCTCAGTATACCCTCTCATCCGCTCCCGCCTGGCTGCCGCCCTGTCGGCGTGGCACCCGGCGGACAGTTCCGCGCGCGGGGTTCTGCGCGCCTGGCGAGGGGCCTGGGGGCCCGCGCTGCAGGCCATGCTGCACCAGCACATCGTGCCCAAGCTGGACCACTGTTTGCAGCATGCGCCGCTTGAGCTCGTTGGCAGGGAGAACACGGCGTGGCTATGGTGCGTAGAATGGCTGGAACTCCTCGGCGCCGCGACCGTAGCGGCCATAGCGGCGCGTGCGCTGCTGCCGCGCTGGCTGGCCGCGCTGGCTGCGTGGCTCAACACCAACCCGCCGCATGCGACTGTGCTTAACTCTTATACCGATTTTAAGAAAATGTTCCCGGAAGAAGTCCTCAAAGAGCCTGCCGTACGAGACGCCTTCCGCAAAGCCTTAGACATGATGAATCGAAGCGCAGATATCGACTCAGTGGAACCTCCTCCGCCGCCGCGCTTCACCATGCCCGAACCGAAGGAAACATGCCGTATAACAGAAGTTTTAGCATCCGCTACACAGGCCAAAAGTTTCTCAGAGTTACTTGAAACTAGGTGTATCGAAAAAGGCATTACTTTTGTACCTATAGCGGGCAAAGCCAGGGAAGGTAGGCCGTTGTATAAGATCGGCGATctacaatgttatgttataaGAAATGTGATCATGTTTTCCAACGATAGTGGTAGGAGTTTCAACCctattagtatggataagttGCTGAATATGGTTGAGGATtga
- Protein Sequence
- MAFSLDSYPVEYEMFGLGTIAGNIVSPLLSSLLATWEPLAAPDEHIPTFQKWRKLLTEEAYNSLLWQHFVPQLTAAAETWNPRMPTPMLRAVSAWQAASPPWLSRACVTRCVVPRVLAAVRAWDPTNDTQPLHQWVLPWHDMAGEALASSVYPLIRSRLAAALSAWHPADSSARGVLRAWRGAWGPALQAMLHQHIVPKLDHCLQHAPLELVGRENTAWLWCVEWLELLGAATVAAIAARALLPRWLAALAAWLNTNPPHATVLNSYTDFKKMFPEEVLKEPAVRDAFRKALDMMNRSADIDSVEPPPPPRFTMPEPKETCRITEVLASATQAKSFSELLETRCIEKGITFVPIAGKAREGRPLYKIGDLQCYVIRNVIMFSNDSGRSFNPISMDKLLNMVED*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00302127;
- 90% Identity
- iTF_00302127;
- 80% Identity
- -