Basic Information

Insect: Cosmia trapezina
Gene Symbol: clz9
Assembly: GCA_905163495.1
Location: LR991034.1:12424238-12426490[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 7.7e-08 5.7e-05 24.2 0.0 4 41 21 59 18 61 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	7.7e-08	5.7e-05	24.2	0.0	4	41	21	59	18	61	0.87

Sequence Information

Coding Sequence: ATGCCATCCGTGTACAGACGAAAGCCTGGCAGTCGTCGATATGTCGACTACACCCAggcagatttaaaaaaatgtctggATGCAATCCAATCAAAAGTGCTCACACAAAGAGCGGCTGCAGAGTTGTTTAACATTCCTCGCAGCACTTTGAAAAACAAATTAACCCGGAAGCACCCTAACAAACCAGGTAAACCTACTATATTTACTGAAGAGGAAGAAAAGGCGTTTGAAGCTCACATAACAGCGCTTTCGGAATATGGGTTTCCTCTGACAGCATTCGacctaaaaattataataaaaaattaccttGCATCCCAGGGAAGagttgtgaaattttttaaggacAACATTCCTGGTAAAGACTGGTTGGCTTCTTTTCTTTCACGACATCAATCTCTTTCACGGCGACTTGCTAACAATATTAAAAGAGTTCGAGCTCAAGTGTCGGAAGAAGTTATTTCCAATTTTATAGAAAACATCGACAAAGAACTAGAAAGCGTTCCACCCGAAAACATATTCAACTACGATGAAAGCAACCTTTGTGATGACCCAGGAAAAAAGACTATATTATGCAGAAGAGGAACAAAATATCCTGAAACCATAATAAACGctacaaaagttaattttagTGTCATGTTCTGTGGCAACGCCGCTGGGGAAGTAGTTCCACCGTTCGTCGTTTATAAGTCGGATCATCTCTGGTCAACTTGGACTGAAAATGGTCCCGAAGGCGCTCGATACAATAGAACAAAGAGCGGATGGATGGACAGCGCAACATTTGAAGACTGGTTTCTCAATCATCTTATGCCAGTTCTTAAGAAGAAAAATGGAAGAAAAGTGGTGATTGGAGACAACCTTGCTTCACATAttaacaaaacagttttgaaggAGTGTGAGAAGCACAATGTTAGTTTTATTTGCTTGCCACCCAACGCAACACATATACTTCAGCCCCTAGACGTGGCATATTTTCGACCTTTGAAGTGCAAGTGGCGGCAAGTATTACTTCAATGGAAGAACAGTCAACTGGGTAGGAAACTGTCGACTACACCTAAGGATCAGTTTCCACGATTATTAAAAACCGCTTTGGATTCTTTGACCGAGACCAAGGCGAATTTGATTGCTGGTTTCAGAAAGACGGGCATACACCCCGTAGATAAAGAGGAACCATTAGCTAGATTGCCCCAACAAGATCGAATTATAAACGCAGCTCTTATCGGAAACTCTTTTATGCAAACATTAGTACAGAGCCGAGCTGAGGCGTGCCCAGAACAGAAAACAATTAGGAAAAAGAaacttaatgtaccacctggaAAATCAATCTGTGCTACTGACCTTGCAGAAGCAGGTCCATCGGGTTTACAGCAGgcaaaaactataaaagaaaagaaaagggcAACAAAACGAAGACAACGCAAAGTTTCTTTATCTTCAAGCTGCAGTGACAGGACCATCAGTCTAGCTTCTTCCACTGAAGACCACATAATGCCTTATGACTCTGAGGATGATGTTCTTCTGGCCAACTATGTGAGTCAGATTAGTGATGCTGATGCACCTGCATTTCGAGACGGATTTTTACTCCATTCACCTGTTTTTCAGCGAGATGTCATAATAGCCCAGATCGAGCATGAGAGTGAAGTAGTAGAGGACTGTGACTCTCCTGTTCTTCAATTAAGAGATGTAGAGCAACAGCTACTTGACGGTTTTAAAGACTTCACTCCCCTTCAATCCATAGAGGATGTAAAGATCGGTGAAGAAAAATGTAGTGAAAGAGAGAAAATTCTAGATTTACCGGTCTTTGAACCTAAATCAAAACTGCAAGTTGAATATGCCGTTGGAAAGAATAATAGAGACCATTCTGCTCTTCATCTGGGAGAGACAATGCAGGTGGATGTAGAAGGTTGTCGAGACAAAGACCTGCGGGTCTCGCCCGTACGTCAAATCGAAAAGTTAAAGCAGGATACGTTAGAGCCACCAGCTTTTCGTGGAGCTTCACGTCCTCAACTTGATCTAGACCTTGTTGTAGGCGACCATGTTCTAGTAACTTGGAATTCACGCAAATACCCAGGTCAAGTCTTATCAGTATCCGAGGAAGGAGCCTTTATAACATGTATGAAAAGAGGTAAGACATACTGGCGGTGGCCCGCGATTAAAGATGAACAGCTTTATAGTTGGAACCTTATAGTGTGTAAGATTGGACCtcctaaatttgaaaaaaaggGTTCTTTCTCTGTTCCAGAAATGAATGAGTGA
Protein Sequence: MPSVYRRKPGSRRYVDYTQADLKKCLDAIQSKVLTQRAAAELFNIPRSTLKNKLTRKHPNKPGKPTIFTEEEEKAFEAHITALSEYGFPLTAFDLKIIIKNYLASQGRVVKFFKDNIPGKDWLASFLSRHQSLSRRLANNIKRVRAQVSEEVISNFIENIDKELESVPPENIFNYDESNLCDDPGKKTILCRRGTKYPETIINATKVNFSVMFCGNAAGEVVPPFVVYKSDHLWSTWTENGPEGARYNRTKSGWMDSATFEDWFLNHLMPVLKKKNGRKVVIGDNLASHINKTVLKECEKHNVSFICLPPNATHILQPLDVAYFRPLKCKWRQVLLQWKNSQLGRKLSTTPKDQFPRLLKTALDSLTETKANLIAGFRKTGIHPVDKEEPLARLPQQDRIINAALIGNSFMQTLVQSRAEACPEQKTIRKKKLNVPPGKSICATDLAEAGPSGLQQAKTIKEKKRATKRRQRKVSLSSSCSDRTISLASSTEDHIMPYDSEDDVLLANYVSQISDADAPAFRDGFLLHSPVFQRDVIIAQIEHESEVVEDCDSPVLQLRDVEQQLLDGFKDFTPLQSIEDVKIGEEKCSEREKILDLPVFEPKSKLQVEYAVGKNNRDHSALHLGETMQVDVEGCRDKDLRVSPVRQIEKLKQDTLEPPAFRGASRPQLDLDLVVGDHVLVTWNSRKYPGQVLSVSEEGAFITCMKRGKTYWRWPAIKDEQLYSWNLIVCKIGPPKFEKKGSFSVPEMNE*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01527105; iTF_01527106; iTF_01527107; iTF_01527108; iTF_00375141; iTF_00375142; iTF_00038698; iTF_01525962; iTF_00036620; iTF_00036621; iTF_00036622; iTF_00036623; iTF_01527103; iTF_01527104; iTF_01093028; iTF_01093980; iTF_00783402; iTF_00783401; iTF_00783403; iTF_01064599; iTF_00237475; iTF_00237489; iTF_01527090; iTF_01527091; iTF_01527092; iTF_01527093; iTF_01527094; iTF_01527095; iTF_01527096; iTF_01527097; iTF_01527098; iTF_01527099; iTF_01527100; iTF_01527101; iTF_01527102;
90% Identity: iTF_01093980;
80% Identity: -