Cimp096522.1
Basic Information
- Insect
- Cordilura impudica
- Gene Symbol
- -
- Assembly
- GCA_963682025.1
- Location
- OY821521.1:31340535-31374527[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.5e-10 5.2e-07 32.0 0.0 1 38 557 595 557 600 0.89 2 4 7.7e-13 1.6e-09 40.0 0.0 2 39 612 649 611 652 0.94 3 4 9.2e-17 1.9e-13 52.6 0.0 1 45 666 711 666 711 0.98 4 4 9.1e-19 1.9e-15 59.0 0.0 1 45 718 763 718 763 0.97
Sequence Information
- Coding Sequence
- ATGAATTGTAAAATAGCGGAAGAAAACATAACTAATATACGGGGTACGGGTCTTTTACGTACCGCGGAACAGTTAAAAATCAAAGGTCTTTGTGAAACAGCAGAAAATGCCGATGATTTGAATGATGCTGCCACAGCAACAATAACCGTATCAGAAAATATACAACAAGCTGTCGTTGGCAATATTGTCAATACAACTGTATTACCAGGCCAACAATCGCCACCCATACCCCACCAATCAcatcaacaacagcagcaacatcaacaacaacagcagcaacaacagcaacaacaacagcagcaacagcagcaccaacagcagcagcaacaacaattgGCAAATACTGCTGTTTTAACACATGCCGTTAGTCCGGGTAGTACACAACAATTAGCAACTGCTGGACAATTGATAACCTCTACACCCCTCAgtacaccacaacaacaacagcaacaacaacagattGGACGAAAATCTCGGGTACGTAAACGTTCGAAATCACCGGACTTACAACAattgcaacaacagcaacaacatccccaagcaattttaatacaaaatcaaaatcaagCAACAATCGTTAGTCTACAACAGACATCAGCTGGCAATTATATACCAGTGTCGGGCGTACAAACGGTAACCACAACGGTTGCGGGCAATCAACAgcatcagcagcaacaacaacaacagaccACAATTATAACGGCCGACGATTCGGATTCGGAAAACAAACCCACACTACAGAAAATTTGCAAAACTGAAGCATCGTCCGTTTCACCGGCATCCACTTCATCGGCATCAGCATCAAATAATGCAGCAGGTGTAACTGCTGTCGCAGCATCGGGTACAGCCATCGTAACACAAATTGTAGTAGCCAGAGACGGAAAAGATAAAAATATGACTAGTTTAGGCATGGGCATGAATGGTGGCATTCTAGGAGTCCCTATGGGCTTTTTAGATTTTGCCGCCGAACCACCGGCACCATCAGCAACACCTGTCACGGTTACAGAACAAGTAGATCTCTCCTGTAACCCCAGCACGGATACCAGAGATTTATCAAatcCCTCAGATCCGCTCGATATCGACAATCATTTGGCCCAACACATGATACAACGACTCGATCAATCTCCCATGCACTCCATACATCATCAGACTGGTGACGAATCAAATTCGAATCTGGTCCAGCATATAAAGAGTGAAGTTTTAGATGCCAAACAACAGCAGCAGGTCCAACAACAACAAGCAGCCGCCCACCATCAAGCTCAACAACAACAGTTACATGCCCAACAATTGGCGCAGGGACAAACacatcaacagcagcagcaacaagcggctcatcaacagcagcagcagcaacaacagcagcagcagcagcaggcACATCAACAACACCACCAACAGTCCCACCAGCAACATCATCAGGAGATTACCGGCGCCACCGTAATGGAGATTGATCCGAGCCAGATAAAACATGAACCAGGAATGATAATCACTCCGGAAATTGTCAATATGATGACAACAGGGCATATGGACATGTATAATTCCGATACGAGCGATGATTCAATGATGATTGCCAATGGTTCACCACACGACCAAAATGAACCCCATTACACGAATTTAGATCAACAACATGGCGATTTGAAAGGTCAGTTTAATGGTCCCAAAACTTGGACACAAGATGATATGAATTCAGCTTTAGATGCACTGAAGAATCAAAACATGAGCCTGACGAAAGCATCCGTTACCTATGGCATCCCCTCAACCACCCTCTGGCAGAGGGCCCACCGCATGGGCATCGAGACACCGAAGAAGGAAGGAGGTACCAAATCCTGGAATGAAGACTCACTCAACAATGCTCTGGAAGCCTTGCGTTCTGGACAAATATCGGCCAACAAAGCCTCGAAAGCCTTTGGTATACCTTCGTCGACGTTATATAAAATAGCACGCCGTGAAGGTATACGATTGGCCGCCCCGTTTAATGCCGCCCCCACCACCTGGACACCAGAGGATTTGGAACGAGCCTTGGAGGCCATCCGTGCCGGTCATACCTCAGTACAGAAGGCAAGTGCCGAATTCGGTATACCAACAGGAACATTATATGGTCGTTGCAAACGAGAAGGTATAGAGTTGTCACGTTCGAATCCCACTCCCTGGTCGGAAGATGCCATGAATGAGGCTTTAAATTCGGTTCGCATTGGCCAAATGTCCATAAATCAAGCTGCTATCCATTATAATTTACCGTACAGTTCTTTGTACGGTCGTTTTAAGCGCGGCAAATATGATGTGTCCAATATCAGTGGTGTAACATCCATTAACAATACATCGGGCAATACCTCCGGTAGCATTGAAATCATTGAACATAGTCAAGAGAATTcgTTGCCTATGTTTCAGCAACAATTCCAATATAGTCCATCACCGCATCAGCAACAGCATGGTGGCGGCGGCGGTAGTACACCGCAACAAAGCCAAACGCCACAACATTTACAGCAACATGTGGTGcatatacaacaacaacagcagcagcatcaTCAACAACAGCCCCAACATGCGCAACATATCCAACAGCAGCAAGATGTTGTAACCTCATccagtcaacaacaacaacagcaagtccaacaacaacagcagcaacatgcCGGCAATTCAGCTgttacacaacaacaacaacaacagcagcaacaacaacaaattcaACAGATTTATCATCATCACAGTACACCCGAGAGAAGTTGA
- Protein Sequence
- MNCKIAEENITNIRGTGLLRTAEQLKIKGLCETAENADDLNDAATATITVSENIQQAVVGNIVNTTVLPGQQSPPIPHQSHQQQQQHQQQQQQQQQQQQQQQQHQQQQQQQLANTAVLTHAVSPGSTQQLATAGQLITSTPLSTPQQQQQQQQIGRKSRVRKRSKSPDLQQLQQQQQHPQAILIQNQNQATIVSLQQTSAGNYIPVSGVQTVTTTVAGNQQHQQQQQQQTTIITADDSDSENKPTLQKICKTEASSVSPASTSSASASNNAAGVTAVAASGTAIVTQIVVARDGKDKNMTSLGMGMNGGILGVPMGFLDFAAEPPAPSATPVTVTEQVDLSCNPSTDTRDLSNPSDPLDIDNHLAQHMIQRLDQSPMHSIHHQTGDESNSNLVQHIKSEVLDAKQQQQVQQQQAAAHHQAQQQQLHAQQLAQGQTHQQQQQQAAHQQQQQQQQQQQQQAHQQHHQQSHQQHHQEITGATVMEIDPSQIKHEPGMIITPEIVNMMTTGHMDMYNSDTSDDSMMIANGSPHDQNEPHYTNLDQQHGDLKGQFNGPKTWTQDDMNSALDALKNQNMSLTKASVTYGIPSTTLWQRAHRMGIETPKKEGGTKSWNEDSLNNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGHTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRIGQMSINQAAIHYNLPYSSLYGRFKRGKYDVSNISGVTSINNTSGNTSGSIEIIEHSQENSLPMFQQQFQYSPSPHQQQHGGGGGSTPQQSQTPQHLQQHVVHIQQQQQQHHQQQPQHAQHIQQQQDVVTSSSQQQQQQVQQQQQQHAGNSAVTQQQQQQQQQQQIQQIYHHHSTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00979276;
- 90% Identity
- iTF_01165452;
- 80% Identity
- -