Basic Information

Insect: Coptotermes formosanus
Gene Symbol: prdm10
Assembly: GCA_013340265.1
Location: BLKM01000227.1:649859-700267[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 4e-05 0.0019 18.0 0.1 2 23 710 731 709 731 0.96

2 14 1.4e-05 0.00069 19.4 5.7 1 23 778 800 778 800 0.98

3 14 0.25 12 6.1 8.6 1 23 806 828 806 829 0.95

4 14 0.011 0.53 10.4 1.0 3 23 859 879 858 879 0.96

5 14 0.0021 0.1 12.6 0.1 2 23 914 935 913 935 0.95

6 14 3.6e-05 0.0018 18.2 0.3 2 23 957 978 956 978 0.97

7 14 0.14 6.5 6.9 1.0 2 23 987 1008 986 1008 0.96

8 14 0.0055 0.27 11.3 0.1 1 23 1014 1036 1014 1036 0.97

9 14 8e-05 0.0039 17.1 0.6 1 23 1042 1065 1042 1065 0.96

10 14 0.0004 0.019 14.9 2.9 1 23 1070 1092 1070 1092 0.98

11 14 7.9e-06 0.00038 20.3 2.1 1 23 1098 1121 1098 1121 0.94

12 14 0.003 0.14 12.2 2.0 1 23 1158 1181 1158 1181 0.97

13 14 0.00093 0.045 13.7 2.3 1 23 1203 1226 1203 1226 0.97

14 14 0.00068 0.033 14.2 1.8 3 23 1266 1287 1265 1287 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	4e-05	0.0019	18.0	0.1	2	23	710	731	709	731	0.96
2	14	1.4e-05	0.00069	19.4	5.7	1	23	778	800	778	800	0.98
3	14	0.25	12	6.1	8.6	1	23	806	828	806	829	0.95
4	14	0.011	0.53	10.4	1.0	3	23	859	879	858	879	0.96
5	14	0.0021	0.1	12.6	0.1	2	23	914	935	913	935	0.95
6	14	3.6e-05	0.0018	18.2	0.3	2	23	957	978	956	978	0.97
7	14	0.14	6.5	6.9	1.0	2	23	987	1008	986	1008	0.96
8	14	0.0055	0.27	11.3	0.1	1	23	1014	1036	1014	1036	0.97
9	14	8e-05	0.0039	17.1	0.6	1	23	1042	1065	1042	1065	0.96
10	14	0.0004	0.019	14.9	2.9	1	23	1070	1092	1070	1092	0.98
11	14	7.9e-06	0.00038	20.3	2.1	1	23	1098	1121	1098	1121	0.94
12	14	0.003	0.14	12.2	2.0	1	23	1158	1181	1158	1181	0.97
13	14	0.00093	0.045	13.7	2.3	1	23	1203	1226	1203	1226	0.97
14	14	0.00068	0.033	14.2	1.8	3	23	1266	1287	1265	1287	0.98

Sequence Information

Coding Sequence: ATGGAAAGCACCGACCCCCAGGGTGCACCTGGGGATGTTGAAAATGATGATGGGATCACGGGGTCTACTATACCGACAAGCCAGGCAGAATCAGAGCTTGATGATTGGTCACCTGTTCCTGGCTCGCAGTTGGACAGTTCTGTTCGGAAAGTAGCTGCAGCATCACGTTTGCTGTTCCTCACAGTTGAGTATGTAGAAGAACCACCAAGTGAATATGGACGATCAGCATTCTCAAGTTTTGAACCGGGTGCACCATTCTCTCCTCAGCCATCATCGTCCTTATCAGAATTTGAGCATCGTGTGAGTCCCCTGGACCCTAATATGAGCTCTGCTGCTAGGTACTCACCAGTGTATACCATAACAGGTACAAGCGCAAGTGCTTTGGCTGTTATCACAGGTGAGGCTCCATCTGCTGGAGGAACAAGTACTTCATCTGATCCAAGCTCACCGTTTCCCACTAGCCAGGTTGTTAGTCCCATTATTAACTCTTCTCCAGCTAATGCCCTTCCATCTTCACCATCGTCTGGTAACCCATACCTGGATGCTACACAGGGACATGCCACAACTGTTGCTCACAGTTATGTGAATCCTAGTTCACCTCTTCAAATACTTTCTGACACTCCTGCAACAGCAGGGGAAGGGCTTTTGAGACAGGTGGTGACTGGTTCAACATattttactactactgctgcatCTTCAGCTTCAGGTAGCATTCTGGGGACCACACCTCCACATTCTCCACTTCAGCCACCTCTAACTCCTACAGATAACTTTGTGGTGGCATCGTCAAATGGCCCACTGGTGGATTCTGTCCCAGCCACACCACCTGATTATCATGGCAGTGGTGATATGACAGTTTCAGTGGCGGTGACTGCTTCACCGAGAAGAGTTAACTCTGCCAGTGAATTGATGATCCAGCAGGATGCAACTCAGTTGGTTGGTGGAGCACCAGATGATAGTGGGCAGTATCATGGTCTGAAGACAGAGGGCGGCAGTGTGCAGTTGCTGATTAGCAGCAGTGATGGATCCAGTATTACCTACAGCTTGGATCCAGGCCAGGCAGGCTATGTAGAGCAGTTGGACAATGTACTTGACACCTTCAAATCTCAAGGGTTGGTGATTGAGGAAGGAGAGGAGGGAGATTTGAGAGTAAGGCATCATGCAATTGCTCGAGATGGAACAACATTACCCCTAGATGTTGCATTAAATGTTACTACTGAGCAGCACCAGGCTCTCATTGATGCTGAACTGCTGGACACGCAAGTGAATGGAGAAATTGACAGCCAAGTTCATAGGTTGGAGCATCCATTACTGGGTGAAGATGTAGACATGAACCTTGGTGTCCCAACATCTGGACTAAAGGCTGGAGCCCCAGACAGCTATGCCAGCATATTGCTGAATGGGCATGGGGAGTCAATAATTAAGGACAACAGCAGTACATTGCCTAGGAGGTCAAAACGTCACCAAATTAAGGTGCCCAGCCCAGAACAGGAGATAATCACCGATTGCAAGGATGATATGAAGAGCTTTTCTGAGGACATTTGGATCAGTGGTGATATAAAACGGTGTGAAGAATGCTgcagttcatatgaacatggcTGCCCTCAGCACAGAGTTCAGACTATCTGTGACAAACCCGTTCCCTCAAGGGCATGGGCCACTTTACCAGTCTCGTATTTGGCAATTAACAAGGTTGGAACAACATCTACTGGCTCACCAGTGTATGGTGTATTTGCTCGGAAAACAATTCCAAAACGGACTCAGTTTGGGCCAATTGAGGGTGTACTGGTGAAGACAGATGACCCCCACATGATTCTGGCAGACAGAGAGGAACCTCAGTTAGAGCTCTTGGTTGAATCAGAAACGGGAGCTATGTTGAAACTTGACACAGGATGTGAGAATTCATCAAATTGGATGCGGTTTGTTCGGGCAGCTGAAAGTTTCAAAGATCAGAACTTGATACTCAGTCAGCAGGGCCATTCTTTGTATTTCACAACCACACGTGTAATTCACCCTCGACAGGAACTTCAAGTTTGGTACAGCTTCCCTTATGCCAATAAACGAGGATTATCACTACTTCAACctgagaaagaaaaacaagCTGTTGAAGAAATGGAACATGTGTGGCCATGCTTTGAATGTAATGAAAGATTTGTCAGTTCAGAAGAGCTACAGAAACACTTAAATGTCCATGATAACGAGCGGgaggaagaagaagaatctgtGAAATCAAAGTCTAAGAAATCTGGACGTACTGTTAGGCGTAAAGGTCTGTCACATTTTACATCCAAGAAATTTAAGTCAGATAGTGATAAACGTGAGTTGTATCCTTACCAATGTCATACCTGTCATCGAGCATTTCCACGCAACTATAGTTTGAAACGACACCAGCTTCTGCATGCTGGggacaagaaatatatttgtgaaaCATGTGGACATCAGTTCTCTCATGTACACAACAGAGACAGACATGTTCGAAAACACCATAAAAATCATGGTCTTGAGAACGGTGGGATACATGCTTCTAACATGTTTATGAAGAAAACCCCCCCAGGGCCTGGCAGTGAGTGGTTATGTTCACACTGCAGTCTAACTTTCAGCAGTGCTTCAGTTCTGAATCTTCATACTCTAGCACATGCGGCCGACAACTTAGAGGAAACAGAAACCATTACTGGACTACCATCCGATTTCCATTCAGTGTACCATGCCGGAGAATTCCTGGTACAAAATGGTGATGTGCAGTGTCCACAATGTACACAGGAATTCCCTAGCAAAAAAGAGTTGATTGAACATGTGTCAGCTCATGGTAAGTTGACTCCTCCACAACTGCGCACTCGCCTGCGCTCTGTAAACCCTGCAAAACCATGGAAATGTGAGCTGTGTTACAAGAGCTTTGCTTCAGAAGATCGTCTTCAGCGTCATATGCTTGTGCATGGGGCTGAGGAATCCAAACCACTGCAGTGTGATGTCTGTTATAAGCGTTTTCTCAATAATTCGGCTCTAGCTTGCCACATCAAAATCCACACAGAGAAGAAGATTTTTGAGTGTCCAATTTGCAAGGCAGTCTTTGACCAGGTTCTTGCTTTGAAAGAACATGTACATATGCATGCTGAAAATGGATTTTTCACCTGTCCACAGTGCAATAAGGTGTTTGATGAGTACAGTCTGATCCGTAAGCACATTCGAGCATTCCACAGTGACAGGAAGCACACTTGCTCGTACTGTTCGAAGCTCTTCCCAACGCTCGACAAACTAAGAATGCACATGCTCAGgCATTCAGATCATCGTGAATTCCTGTGTGCCAACTGTGGGAAGCAGTTTAAACGCAAGGACAAGTTGAAAGAACATATGAAACGTATGCATTCGGCTGAACGGGAGCTGAGACTTGCTATGAAACCTCATCGTACACCAACTGCCAAGAAATTCATGCCTAAGGTACAGGTTTCACCAACTGATTATCACCGTTTCATCTACAAGTGCCATACCTGCCTCTTGGGGTTTAAACGCCGTGGAATGCTAGTGAACCATCTTGCAAAGCGGCATCCTGATATCAGCCCTGATTCTGTTCCTGAACTTAACTTGCCGATCCTGAAAACTACACGAGATTATTACTGTCAGTACTGTGAAAAGatttataaaagtaGTTCCAAAAGAAAGGCTCACATCTTGAAAAATCACCCTGGAGCAGAGTTGCCAATGAGCAATAGACGAAAGGGAGGTGTTCCAGACATACCGGGACTGCCAAACCCAACATTCTCTCAGACTGTGGGTAGTGTAACAACACATCCACATGGCTGTCCCTGGTGTCATAAGCAGTATGCATCAAAAGCAAAGTTACTCCAACACCAACGCAAGAAGCATATTGATCTGCTGCCTCAAAGCCAGCAGTCACCTCGGGTCTTGAAGAACCCCAACTCTCCGGGAGGACCTGAAGGTGGGAAGTTCTTGCCCATTTCAGTTACTTCAGCAGCTCCAGCTCCACCGGCCTGTGAGGCACAAGTGGTACAGTTGCAAAATACTGCAGACAGTGTGGTCACTTCACAGACCATCAGCATTATTCCAGCAGAGTATCAGATCACAGGAACTGAAGAGGCCTTGAGGGAGTATCAAGAATCTGGAATAATAATAGATGCTTCAGCTTTAAAACGTCCGCTGAAGAGCCTTGCTGATGGTGTCTCGGCAGACCTCCTTACACAAGCCATGACTGAGTTGAGTCAGATCAGTGAATTTCGTGTATCTGTTAGTGGGAGTACAACGAATGGCCAAGATCACTACTTCAAAATTGTACAAACTTCTTCAAACCCTGTTACTCTAACCCAATCAGAGGAAGCTGGAAACCATCCTGATATATCAACTCCTCCACATACGCCTGGACAGGACCATCAAGATCCCATGTCCCCTGCCGCTGCCCCTGCTCCCACCACGACTTCTCACTTGCAACATCTCCTCACTTCTGATCAGTCCTACTCACTGCCTTCTTCTCCTGCTGCTACAGCACCACTTTCTTCATCCCCTGGACCACGAGCATGGACCCAAGATCACGCTACCTACACTCCGTATACCGCCCGCTGA
Protein Sequence: MESTDPQGAPGDVENDDGITGSTIPTSQAESELDDWSPVPGSQLDSSVRKVAAASRLLFLTVEYVEEPPSEYGRSAFSSFEPGAPFSPQPSSSLSEFEHRVSPLDPNMSSAARYSPVYTITGTSASALAVITGEAPSAGGTSTSSDPSSPFPTSQVVSPIINSSPANALPSSPSSGNPYLDATQGHATTVAHSYVNPSSPLQILSDTPATAGEGLLRQVVTGSTYFTTTAASSASGSILGTTPPHSPLQPPLTPTDNFVVASSNGPLVDSVPATPPDYHGSGDMTVSVAVTASPRRVNSASELMIQQDATQLVGGAPDDSGQYHGLKTEGGSVQLLISSSDGSSITYSLDPGQAGYVEQLDNVLDTFKSQGLVIEEGEEGDLRVRHHAIARDGTTLPLDVALNVTTEQHQALIDAELLDTQVNGEIDSQVHRLEHPLLGEDVDMNLGVPTSGLKAGAPDSYASILLNGHGESIIKDNSSTLPRRSKRHQIKVPSPEQEIITDCKDDMKSFSEDIWISGDIKRCEECCSSYEHGCPQHRVQTICDKPVPSRAWATLPVSYLAINKVGTTSTGSPVYGVFARKTIPKRTQFGPIEGVLVKTDDPHMILADREEPQLELLVESETGAMLKLDTGCENSSNWMRFVRAAESFKDQNLILSQQGHSLYFTTTRVIHPRQELQVWYSFPYANKRGLSLLQPEKEKQAVEEMEHVWPCFECNERFVSSEELQKHLNVHDNEREEEEESVKSKSKKSGRTVRRKGLSHFTSKKFKSDSDKRELYPYQCHTCHRAFPRNYSLKRHQLLHAGDKKYICETCGHQFSHVHNRDRHVRKHHKNHGLENGGIHASNMFMKKTPPGPGSEWLCSHCSLTFSSASVLNLHTLAHAADNLEETETITGLPSDFHSVYHAGEFLVQNGDVQCPQCTQEFPSKKELIEHVSAHGKLTPPQLRTRLRSVNPAKPWKCELCYKSFASEDRLQRHMLVHGAEESKPLQCDVCYKRFLNNSALACHIKIHTEKKIFECPICKAVFDQVLALKEHVHMHAENGFFTCPQCNKVFDEYSLIRKHIRAFHSDRKHTCSYCSKLFPTLDKLRMHMLRHSDHREFLCANCGKQFKRKDKLKEHMKRMHSAERELRLAMKPHRTPTAKKFMPKVQVSPTDYHRFIYKCHTCLLGFKRRGMLVNHLAKRHPDISPDSVPELNLPILKTTRDYYCQYCEKIYKSSSKRKAHILKNHPGAELPMSNRRKGGVPDIPGLPNPTFSQTVGSVTTHPHGCPWCHKQYASKAKLLQHQRKKHIDLLPQSQQSPRVLKNPNSPGGPEGGKFLPISVTSAAPAPPACEAQVVQLQNTADSVVTSQTISIIPAEYQITGTEEALREYQESGIIIDASALKRPLKSLADGVSADLLTQAMTELSQISEFRVSVSGSTTNGQDHYFKIVQTSSNPVTLTQSEEAGNHPDISTPPHTPGQDHQDPMSPAAAPAPTTTSHLQHLLTSDQSYSLPSSPAATAPLSSSPGPRAWTQDHATYTPYTAR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00396714; iTF_01567283;
90% Identity: -
80% Identity: -