Basic Information

Insect: Cryptotermes secundus
Gene Symbol: prdm10
Assembly: GCA_002891405.2
Location: NW:395359-451540[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.001 0.029 14.3 0.1 2 23 716 737 715 737 0.96

2 14 5.1e-06 0.00015 21.6 4.8 1 23 785 807 785 807 0.98

3 14 0.0042 0.12 12.4 5.1 1 23 813 835 813 836 0.96

4 14 0.02 0.56 10.3 1.0 3 23 866 886 865 886 0.96

5 14 0.0045 0.13 12.3 0.1 2 23 921 942 920 942 0.94

6 14 0.00017 0.0049 16.8 0.4 2 23 964 985 963 985 0.97

7 14 3.6 1e+02 3.2 0.9 2 23 994 1015 993 1015 0.82

8 14 0.062 1.8 8.7 0.6 1 20 1021 1040 1021 1043 0.93

9 14 0.0033 0.095 12.7 2.1 1 23 1049 1072 1049 1072 0.95

10 14 0.19 5.3 7.2 3.2 1 23 1077 1099 1077 1099 0.96

11 14 0.00012 0.0034 17.3 2.0 1 23 1105 1128 1105 1128 0.94

12 14 0.005 0.14 12.1 2.0 1 23 1165 1188 1165 1188 0.97

13 14 0.0016 0.045 13.7 2.3 1 23 1210 1233 1210 1233 0.97

14 14 0.014 0.4 10.7 2.3 3 23 1273 1294 1272 1294 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.001	0.029	14.3	0.1	2	23	716	737	715	737	0.96
2	14	5.1e-06	0.00015	21.6	4.8	1	23	785	807	785	807	0.98
3	14	0.0042	0.12	12.4	5.1	1	23	813	835	813	836	0.96
4	14	0.02	0.56	10.3	1.0	3	23	866	886	865	886	0.96
5	14	0.0045	0.13	12.3	0.1	2	23	921	942	920	942	0.94
6	14	0.00017	0.0049	16.8	0.4	2	23	964	985	963	985	0.97
7	14	3.6	1e+02	3.2	0.9	2	23	994	1015	993	1015	0.82
8	14	0.062	1.8	8.7	0.6	1	20	1021	1040	1021	1043	0.93
9	14	0.0033	0.095	12.7	2.1	1	23	1049	1072	1049	1072	0.95
10	14	0.19	5.3	7.2	3.2	1	23	1077	1099	1077	1099	0.96
11	14	0.00012	0.0034	17.3	2.0	1	23	1105	1128	1105	1128	0.94
12	14	0.005	0.14	12.1	2.0	1	23	1165	1188	1165	1188	0.97
13	14	0.0016	0.045	13.7	2.3	1	23	1210	1233	1210	1233	0.97
14	14	0.014	0.4	10.7	2.3	3	23	1273	1294	1272	1294	0.97

Sequence Information

Coding Sequence: ATGGAAAGCACCGACCCCCAGGTCGCACCTGGGGATGTTGAAGACGATGATGGGATTACAGGATCTACCATGCCGACAAACCAAGCAGAAGCAGAGCTTGATGACTGGTCTCCTGTTACTAGCTCACAGTTGGAAAGCTCTGTGCAGAAAGTAGCAGCTTCATCATCACGTTTGCTATTCCTCGCAGTTGAATATGTAGAAGAGCCGCCAAATGAATATGGCCGTTCAGCATTCTCTAGTTTTGAGCCAGGTGCACCGTTCTCTCCTCAAGCATCGTCATCCTTATCAGAGTTTGAGCATCGTGTGAGTCCTCTGGATCCCAATCTGAGTTCTGCTGCCAGGTACTCACCAGTGTATGCCATAACAGGTACAAGTACAGGTGCCTTGGCTGTGATCACAGGCGAGGCTTCATCTGCTGGAGGAACAAGCACTTCATCTAATCCGAGCTCACCATTTCCCACTAGCCAAGTTGTGAGTCCTATTATCAATTCTTCTCCAGCTAATGCACTTCCGTCTTCTCCATCATCTGGAAACCCTTACATAGACACTACACAAGGACATGCCACAACTGTTGCCCACAGTTATGTGAATCCTAGCTCACCTCTTCAGATACTCTCTGACAATCCTACATCAACAGAAGAAGGGCTTCTGAGGCAGGTGGTGACTGGATCAACATACTTTAGAACCACTGCTGCATCTTCAACCTCAGGTAGCATCTTGGGGCCCACACCTCCACATTCTCCACTGCAGGCACCTCTGACACCTACAGAGAGCTATGTTGTGTCATCATCAACCGGCCCCCTGGCGGACACCGTTCCGGCAACATCAAGTGATTACCATGGCAATGGTGAAGTGACGGTTGCAGTGGCAGTGACAACTTCTCCTGGAAGAGTTGACTCCAGCAGTGAACTGATGATCCAACAGGAGGCTGTACAGTTGGTTGGTGGAGCAGCAGATGGTGGTGAGCAGTATCATCGTATGAGTGGCAGGCTGAAAACAGAGGGTGGCAGCGTGCAGCTGCTGATCAGCAGCAGTGACGGATCCAGCATCACTTACAGTTTGGATCCAGGCCAGACAGGCTATGTTGAGCAGTTGGACACTGTGCTTGATACCTTCAAGTCTCAAGGACTGGTGATTGAGGAAGGGGAGGAAGGAGATTTGAGAGTAAGTCAGCATTCAGTTACTCAAGATGTTACTGCACTGCCCTTAGATGTTTCGTTAAATGTTACAACTGAGCAGCAGCAGAATCTCATTGAAACTGAACTGTTGGATTCCCAAGTGAATGGAGGCATTGGGACTCAAGTCCGTGAATTAGAACATCCCTTGTTGGGTGAAGATGTGGACATGAACCTTGGGGTCTCAGCATCTGGACTGAAGACTGCTGGCCCAGAAAACTATGCCAATATATTGCTGAACGGACATGATGAGACAATAGCAAAGAACAGTAGCAATACATTGCCTAGAAGATCAAAACGTCACCAGATTCAAGTGCACAATTCACAACAGCAAACAAATGCAGATTGCAAGGATGATACAAAGAGTTTCTCTGAGGACATTTGGATCACTGGTGATATAATAAAACGGTGTGAAGAATGCTGCAGTTCTTATGAGCATGGCTGCCCTCAGCATCGAGTACAGTCCATCTGTGACAAACCTGTCCCTTCAAGAGCATGGGCCACTTTACCAGCCTCCTACTTGGCAATTAACCGAGTTGGAACTTCATCTGATGGATCACCAGTGCATGGGGTATTTGCTCGGAAAACAATTCCAAAGCGGACCCAGTTTGGGCCCATTGAGGGTGTACTGGTGAAGGCGGATGACCCACACATGATTGTGGCTGAGGGAGAAGAACCGCAGCTAGAGTTGCTGGTTGAATCAGAAACTGGAGCCATGCTGAAGCTTGACACAGGATGTGAAAATTCATCAAATTGGATGCGGTTTGTACGAGCAGCAGAAAACTTCAAAGATCAGAACCTGATACTTAGTCAGCAGGGTCATTGTTTGTATTTCACGTCCACACGAGTAATCCACCCTCGTCAAGAACTCCAAGTGTGGTATAGCTTTCCATATGCCAATAAACGAGGATTACCCCTGCTTCAACCTGATGTAGAAAAAAGAGCTGTTGAAGAGGTGGAACATATGTGGCCGTGCTTTGAATGTAATGGAAAGTTTGCCAGTTCAGAAGAGCTGCAGAAACATTTAAATATCCATGATAATGAACGGGATGAAGATGGTGATTCACTGAAATCGAAATCTAAGAAATCTGGACGAACTTCACGGCGTAAGGGCCTGTCACATTTTGCATCCAAGAAATTTAAGTCAGACAGTGATAACCATAATGAGTTGTACCCTTACCAGTGTCATATTTGTCATCGAGCATTTCCACGCAATTATAGTTTGAAACGACACCAGCTTCTGCACGCTGGGGACAAGAAGTATGTGTGTGAAATCTGTGGATACGAGTTCTCCCATGTGCACAACAGAGACAGACATGTTCGAAAACACCATAAGAATCAGGAGGGTGAAAGCAACGGGGTTCATGCTTCTAATGCATGTATGAAGAAGAAACCACCAGGACCCAGTAAAGAATGGTTATGTTCACACTGCAGTCTGACTTTCACCAGTGCTTCAGTACTTAATCTTCATACACTAGCCCACGCAGCAGACAACTTAGAAGAAGCAGAGACTATTACAGGACTTCCGTCTGATTTCCATTCAGTCTACCATGCCGGGGAATTCCTTGTGCAAAATGGAGATGTGCAGTGTCCACAATGTACTCAGGAATTTCCCAGTAAAAAAGAATTGATTGAACATGTGACAGCTCATGGTAAGCTGACTCATCCACAACCACGCCCTCGAATGCGCTCTGTAAACCCTGCGAAGCCATGGAAGTGTGAGCTCTGTTACAAAAGCTTTGCTACAGATGATCGCCTTCAGCGTCATATGCTGGTACATGGGGCTGAGGAATCCAAACCATTGCAATGCGACATATGCTATAAGCGTTTTCTCAATAATTCAGCTGTAGCCTGCCATGTCAAAATCCACTCAGAAAAGAAGAGCTTTGAATGTTGCATCTGCAAGACAGTGTTTGATCAGTACCTTGCTTTGAAAGAACACATTCCTATTCATGCAGTAAATGGACGTTTCACTTGTCGGCAGTGCACGAAGGTGTTTGATGAGTACAGTCTGCTCCGTAAACACAATCGAGCATTCCACAGTGACAGGAAGCACATTTGCTTGCATTGTTCCAACCTCTTCCCAACGCTCGACAAACTCAGAATGCATATGCTCAGGCATTCAGATCATCGTGAATTCCTGTGTGCCAATTGCGGGAAACAGTTTAAACGCAAGGACAAGTTGAAAGAACATACGAACCGTATGCATTCAGCCGAACGAGAGCTGCGACTTGCTATGAAACTTCATCGCGCACCAACAGCCAAGAAGTTCATGCCTAAGGTACAGGTTTCTCCAACAGATTATCATCGTTTCATCTACAAGTGTCATACCTGTCTCTTGGGATTTAAGCGCCGTGGAATGCTTGTGAATCACCTGGCAAAACGCCATCCTGACATCAGCCCTGATTCTGTTCCTGAACTTAATCTGCCAATTCTGAAAACTACCCGAGACTATTACTGTCAATATTGTGAAAAGATTTATAAGAGTAGTTCCAAAAGGAAGGCTCACATCTTGAAAAATCACCCTGGAGCAGAGTTGCCAATGAGCAACAGACGGAAGGGAGGTGTTCCAGAGATTCCAGGGGTGCCAAACCCAACATTCTCTCAGACTGTGGGCAGTGTGACAACACATCCACATGGCTGCCTGTGGTGTCATAAGCAGTATGCATCAAAGGCAAAATTGCTCCAACACCAGCGCAAGAAGCATGTTGACTTACTGCCTCAAAACCAACAGTCACCACGTGCCATGAAAAATCCCAACTCTCCAGGAGGACCAGAAGGTGGAAAATTTTTGCCCGTGTCAGTAGCTCCAGCATCCCCAACCTGTGAGGCACAGCAAGTGGTACAGTTGCAGAGCACAGCAGACAGTGTGGTCACTCCACAGACAATCAGCATTATTCCAGCAGAATATCAGATCACAGGAAGTGAAGGGGCCCTGCGAGAATATCAACACTCTGGAATAATAATAGATACATCAACTTTAAAACGTCCACTAAAGAGCCTTGCTGATGGAGTCTCAGCAGAACTCCTAACACAAGCCATGACAgaactgagccagatcagtgaGTTCCGTGTATCTGTCAGCGGGAGTACAACATCTGGACACGATCACTACTTCAAAATTGTACAGACTTCTTCAGATCCAGTCACTGTAACCCAGTCAGGACAGTCTGAAACCCAACCTGATTCATCATCAACTGCAGATACCCCTGGACAGGATCATCCAGATCCCCTGTCACCTGCTTCTGCCCCTGCCCCCACTTCTACCTCTCACTTGCAACATCTCCTCACTTCTGATCAATCTTACTCACTCCCTTCTTCTCCTGCTACAGCACTGTCTTCATCATCTCCTGGTCCCCGTGCCTGGACCCAAGCAAATGCCATCTACACTCCGTATACAGCCCGCTGA
Protein Sequence: MESTDPQVAPGDVEDDDGITGSTMPTNQAEAELDDWSPVTSSQLESSVQKVAASSSRLLFLAVEYVEEPPNEYGRSAFSSFEPGAPFSPQASSSLSEFEHRVSPLDPNLSSAARYSPVYAITGTSTGALAVITGEASSAGGTSTSSNPSSPFPTSQVVSPIINSSPANALPSSPSSGNPYIDTTQGHATTVAHSYVNPSSPLQILSDNPTSTEEGLLRQVVTGSTYFRTTAASSTSGSILGPTPPHSPLQAPLTPTESYVVSSSTGPLADTVPATSSDYHGNGEVTVAVAVTTSPGRVDSSSELMIQQEAVQLVGGAADGGEQYHRMSGRLKTEGGSVQLLISSSDGSSITYSLDPGQTGYVEQLDTVLDTFKSQGLVIEEGEEGDLRVSQHSVTQDVTALPLDVSLNVTTEQQQNLIETELLDSQVNGGIGTQVRELEHPLLGEDVDMNLGVSASGLKTAGPENYANILLNGHDETIAKNSSNTLPRRSKRHQIQVHNSQQQTNADCKDDTKSFSEDIWITGDIIKRCEECCSSYEHGCPQHRVQSICDKPVPSRAWATLPASYLAINRVGTSSDGSPVHGVFARKTIPKRTQFGPIEGVLVKADDPHMIVAEGEEPQLELLVESETGAMLKLDTGCENSSNWMRFVRAAENFKDQNLILSQQGHCLYFTSTRVIHPRQELQVWYSFPYANKRGLPLLQPDVEKRAVEEVEHMWPCFECNGKFASSEELQKHLNIHDNERDEDGDSLKSKSKKSGRTSRRKGLSHFASKKFKSDSDNHNELYPYQCHICHRAFPRNYSLKRHQLLHAGDKKYVCEICGYEFSHVHNRDRHVRKHHKNQEGESNGVHASNACMKKKPPGPSKEWLCSHCSLTFTSASVLNLHTLAHAADNLEEAETITGLPSDFHSVYHAGEFLVQNGDVQCPQCTQEFPSKKELIEHVTAHGKLTHPQPRPRMRSVNPAKPWKCELCYKSFATDDRLQRHMLVHGAEESKPLQCDICYKRFLNNSAVACHVKIHSEKKSFECCICKTVFDQYLALKEHIPIHAVNGRFTCRQCTKVFDEYSLLRKHNRAFHSDRKHICLHCSNLFPTLDKLRMHMLRHSDHREFLCANCGKQFKRKDKLKEHTNRMHSAERELRLAMKLHRAPTAKKFMPKVQVSPTDYHRFIYKCHTCLLGFKRRGMLVNHLAKRHPDISPDSVPELNLPILKTTRDYYCQYCEKIYKSSSKRKAHILKNHPGAELPMSNRRKGGVPEIPGVPNPTFSQTVGSVTTHPHGCLWCHKQYASKAKLLQHQRKKHVDLLPQNQQSPRAMKNPNSPGGPEGGKFLPVSVAPASPTCEAQQVVQLQSTADSVVTPQTISIIPAEYQITGSEGALREYQHSGIIIDTSTLKRPLKSLADGVSAELLTQAMTELSQISEFRVSVSGSTTSGHDHYFKIVQTSSDPVTVTQSGQSETQPDSSSTADTPGQDHPDPLSPASAPAPTSTSHLQHLLTSDQSYSLPSSPATALSSSSPGPRAWTQANAIYTPYTAR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00370429;
90% Identity: -
80% Identity: -