Basic Information

Insect: Zootermopsis nevadensis
Gene Symbol: prdm10
Assembly: GCA_000696155.1
Location: NW:194296-220429[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 5.1e-05 0.0018 18.0 0.1 2 23 764 785 763 785 0.96

2 14 6.9e-06 0.00025 20.7 4.7 1 23 833 855 833 855 0.98

3 14 0.068 2.4 8.2 7.7 1 23 861 883 861 884 0.96

4 14 0.015 0.54 10.2 1.0 3 23 914 934 913 934 0.96

5 14 0.0028 0.099 12.5 0.1 2 23 969 990 968 990 0.95

6 14 0.0019 0.067 13.1 0.6 2 23 1012 1033 1011 1033 0.97

7 14 0.097 3.5 7.7 1.1 2 23 1042 1063 1041 1063 0.96

8 14 0.0066 0.24 11.3 0.1 1 23 1069 1091 1069 1091 0.97

9 14 0.003 0.11 12.4 0.9 1 23 1097 1120 1097 1120 0.96

10 14 4.7e-05 0.0017 18.1 2.3 1 23 1125 1147 1125 1147 0.98

11 14 1e-05 0.00037 20.2 2.1 1 23 1153 1176 1153 1176 0.94

12 14 0.0038 0.14 12.1 2.0 1 23 1211 1234 1211 1234 0.97

13 14 0.0012 0.043 13.7 2.3 1 23 1256 1279 1256 1279 0.97

14 14 0.00087 0.031 14.1 1.8 3 23 1319 1340 1318 1340 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	5.1e-05	0.0018	18.0	0.1	2	23	764	785	763	785	0.96
2	14	6.9e-06	0.00025	20.7	4.7	1	23	833	855	833	855	0.98
3	14	0.068	2.4	8.2	7.7	1	23	861	883	861	884	0.96
4	14	0.015	0.54	10.2	1.0	3	23	914	934	913	934	0.96
5	14	0.0028	0.099	12.5	0.1	2	23	969	990	968	990	0.95
6	14	0.0019	0.067	13.1	0.6	2	23	1012	1033	1011	1033	0.97
7	14	0.097	3.5	7.7	1.1	2	23	1042	1063	1041	1063	0.96
8	14	0.0066	0.24	11.3	0.1	1	23	1069	1091	1069	1091	0.97
9	14	0.003	0.11	12.4	0.9	1	23	1097	1120	1097	1120	0.96
10	14	4.7e-05	0.0017	18.1	2.3	1	23	1125	1147	1125	1147	0.98
11	14	1e-05	0.00037	20.2	2.1	1	23	1153	1176	1153	1176	0.94
12	14	0.0038	0.14	12.1	2.0	1	23	1211	1234	1211	1234	0.97
13	14	0.0012	0.043	13.7	2.3	1	23	1256	1279	1256	1279	0.97
14	14	0.00087	0.031	14.1	1.8	3	23	1319	1340	1318	1340	0.98

Sequence Information

Coding Sequence: ATGGTTGCTATGGTTGTTCGTCGTCTGCTTGTTGCTAAGGTGCATCGCCAAATCTCGTTCCATTCCGCAATTCGTGAGAAAGTTGTAGGCTTCAACAAAGGCTGTTTGTGCAGTATCATCTACATTGATGAACTTGTGTTACACCATCTACACTTAATGGAAAGAACCGACCCCCAGGGTGCACCTGGGGATGTTGAAAACGATAATGGGATCACTGGACCTACTATGCCGACAAGCCAAGCAGAAGCAGAGCTTGATGATTGGTCTCCTGTTACTAGTTCACATTTGGAAAGTTCTGTTCGGAAAGCTGCAGCTTCAACATCACGTTTGCTGTTCCTCACAGTTGAGTATGTCGAAGAAGCATCAAGTGATTATGGCAATTCGGCATTCTCAAGTTTTGAGCCAGTTGCACCATTCTCCCCTCAACCATCATCATCCTTATCAGAGTTTGAGCATCGCGTGAGTCCCCTGGATCCTAACATGAGTTCAGCCGCTAGATACTCACCAGTGTATGCTATAACAGGTACAGGTACAAGTGCTTTGGCTGTAGTCACTGGTGAGGCTTCATCTGCTGCCGGAACAGGTACTTCATCTAATCCAAGCTCGCCGTTTCCCAGTAGCCAGGTTGTGAGTCCGGTCATCAACTCTTCTCCGGCCAATGCCCTTCCACCTTCGCCGTCCTCAGGTAACCCATATATAGACACTACACAGGTGCATACCACAACTGTTGGTCACGGTTATGTGAATCCTACTTCACCCCTTCAGATACTGTCTGATAATCGTACGTCAACAGGGGAAGGTCTCCTGAGGCAGGTTGTGTCTGGAACGTCATACTTCagagctgctgctgctgcatcTTCAACTTCAGGTGGTATCTTGGGGACTTCACCCCCTCATTCTCCACTACAGCCACCCCTGACACCTACGGACAACTATGTGGTGTCATCGTCAACTGGCCCTCTGGTGGATTCCATGTCAGCTACACCATCTAATTTTCATGGCAATGATGATGTGACAGTGGCTGTAGCAGTGACCACTCCTCCTGGAAGAGTCGACTCCACCAGCGAACTGATGATCCAACAGAATACAGGCCAGTTGGTTGGTGGTGCCCCAGATGGCAGTCAGCAGTACCATGGAATGAGTGGAGGACTGAAGACGGAGAGTGGCCGTGTGCAGCTGCTGATCAGCAGTAGTGATGGATCCAGTATTACCTACAGTTCGGATCCAGGCCAAGCGTACTATGTCGAACAGCTGGATAATGTGCTTGATACTTTCAAATCTCAAGGGCTGGTGATCGAAGAGGGAGATTTGAGAGTAAGGCATCATTCAGTTGTTCGTGGTGGCGCGACTTTACCCTTGGACATTTCTTTAAACGTTACCGCTGAGCAGCAACAAGATCTAATTGATGCCGAGCTGTTAGAATCGCAAGTGAATGGCGGTATCGAGAGCCAAGTTCGTAGGTTAGAACATCCCTTGTTGGGTGAAGATGTGGACATGAACCTCGGTGTCGCAGCATCTGGACTAAAGGCTCCTGCCCCAGACAACTTTGTCAATGTATTGTTGAATGGGCATGCAGAGACCATAGTGAAGAAGGATAACAGTATGTTGCCTAGGAGATCAAAACGTCACCAGATTCAGGCGCGCAGTCCGCAGCAGGAGATAATTGCAGATTTCAAAGATGATACAAAGAGTTTCTCTGAGGACATTTGGATCAATGGTGATATAAAACGGTGTGAAGAATGCCACAACTCGTATGAGCATGGCTGCCCTCGGCATCGAGTGCAGACTATATGTGACAAGCCCGTCCCTTCAAGGGCCTGGGCCACTTTACCAGCCTCTTATTTGGCAATTAACAAAGTTGGGACAACATCTGATGGATCACCAGTGTATGGCGTATTTGCTCGGAAAAGAATTCCAAAGCGAACTCAGTTTGGGCCCATTGAGGGTGTACTGGTAAAGGCAGATGAACCTCACGTGATTTTGGCTGGGGGAGAAGAACCACAGCTTGAGTTGTTGGTGGAATCGGAAACTGGAGCCATGTTGAAACTTGACATTGAAAGTGAGAATTCATCTAACTGGATGCGGTTTGTGCAGGGAGCTGAAAGTTTCAAAGATCAGAATCTAATATTGAGTCAGCGGTCATTCTTTATATTCACAACTACACGAGTAATCCACCCTCGACAGGAACTCCAAGTATGGTATAGCCTTCCGTATGCCAATAAGCGAGGACTACCCCTGCTTCAACCCGACCCAGGAAAAAGAGTTGTTGAAGACCTGGAACATATGTGGCCATGCTTTGAATGTAATGAGAGGTTTGTCAGCTCTGAAGAGCTACAGAAGCACTTGAATGTTCATGACAATGAACGGGAGGAAGATGGAGAGCCTCTGAAATCAAAGTCTAAGAAATCTGGGCGAACATTTAGGCGCAAAGGTGTGTCACATTTTACACCAAAGAAATTTAAGTCAGATGGTGATAAACGTACTGAATTGTACCCTTACCAGTGTCATGTCTGTCATCGAGCCTTTCCTCGCAACTACAGTTTGAAACGACACCAGCTTCTGCATGTTGGGGAGAAGAAGTACATTTGTGAAATTTGTGGACATCAGTTCTCTCATGTGCACAACAGAGACAGGCATGTTCGAAAACACCATAAAAATTATGGCAGTGACAACAGTGGGAAATTTACTTCCAACACAGTTTTGAAGAAGAAGCCACCAGGGCCTGGTAATGAGTGGTTATGTTCACACTGCAGTCTGACTTTCACCAGTGCGTCAGTCTTGAATCTTCATACTCTAGCCCATGCAGCAGACAACTTAGAGGAAACAGAAATTATCACTGGACTGCCATCTGATTTCTATTCAGTGTACCATGCTGGGGAATTTCTTGTACAAAATGGTGATGTGCAGTGTCCACAGTGTACACAGGAATTCCCTAGCAAAAAGGAACTGATTGATCACGTATCAGCGCATGGTAAACCAACTGCTCCACAGCTACGCTCTCGCCTGCGTTCCGTAAACCCTGCTAAGCCATGGAAGTGTGATCTTTGTTACAAGAGCTTTGCAGCAGAAGATCGCCTTCAGCATCACATGTTGGTACACGGGGCTGAAGAATCCAAGCCCCTGCAGTGTGACATATGCTATAAGCGTTTCCTCAATAATTCTGCTCTGGCTTGCCACATAAAAATTCACACAGAGAAGAAGATCTATGAATGTCCAATTTGCAAGGCAGTCTTTGACCAGGTCCTTGCTTTGAAAGAACATACGCACATTCACTCAGAAAATGGATTATTTACTTGTCTGCAGTGCAGTAAGGTGTTTGATGAGTACAGTCTGATCCGTAAACACATTCGAGCATTCCACAGTGACAGGAAGCACACTTGCTCATACTGTTCCAAGCCGTTCCCAACGCTCGACAAACTCAGAATGCATATGCTCAGGCATTCAGATCACCGCGAATTCCTGTGTGCCAACTGTGGGAAGCAGTTTAAACGCAAGGACAAGTTGAAAGAGCATATGAAACGTATGCATTCGGCCGAACGGGAACTGCGACTTTCCATGAAACCTTATCACACGCCAACTGCCAAGAAATTCATGCCCAAGGTTTCTCCAACAGATTATCATCGATTTATCTACAAATGCCACACTTGTCTCTTGGGGTTTAAGCGTCGTGGAATGCTTGTGAATCACCTGGCAAAGCGTCATCCTGACATCAGTCCTGATTCTGTTCCTGAACTTAACTTGCCGATCCTGAAAACAACCCGAGACTATTACTGTCAGTATTGTGAAAAGatttataaaagTAGTTCGAAGAGAAAGGCTCACATCTTGAAAAATCACCCTGGAGCAGAGTTGCCAATGAGCAACAGACGAAAGGGAGGTGTTCCAGAGATACCAGGCATACCAAACCCAACATTCTCACAGACTGTAGGCAGCGTAACAACGCATCCACATGGCTGTCCCTGGTGTCACAAGCAGTATGCATCAAAAGCAAAGTTACTGCAACACCAACGCAAGAAACACATTGATCTGCTGCCTCAGAACCAGCAGTCACCTCGGGTGATGAAAAATCCCAACTCTCCAGGAGGACCTGAAGGTGGAAAGTTTTTGCCGATGTCGGTAGCTTCAAGACTCCCAACCTGTGAAGCACAGCAGGTGGTACAGTTGCAAGATACAGCAGACAGTGTGGTCACCTCACAGACCATCGGCATTATTCCAGCAGACTATCAGATCACAGGAACTGAAGAGGCCTTACAGGATTATGAAGAATCTGGAATAATAATAGACACTTCAATTTTGAAACGTCCATTGAAGAATCTCGCCGATGGAGTCTCAGAAGAAATTCTCAAGCGAGCCATGACAGAACTGAGCCAGATCAGTGAGTTTCATGTATCTGTTAGTGGGGGTACAGCATCTGGCCTAACTGGCCAGGATCACTTCTTCAAAATTGTACAAACTTCTTCAAACCCAATTACAGTAACCCAATCACAGGAATCTGAAATCCATCCCGATACGTCAACTCCTCAAAGTGCACCCGGACGTAACTGTCAGGATCCCATGTCCCCTGCTACTGCATCTGCCCCTACTACTACCTCTCAGTTGCAACATCTCCTCACTTCCGATCAGTCCTATTCGCTCCCGTCTTCTCCCGCTGCCACGGCATCACCTTCATCATCTTCTCCAGGACCACGTGCCTGGACCCACGCTCATGCCACCTACACTCCCTATACGGCCCGCTGA
Protein Sequence: MVAMVVRRLLVAKVHRQISFHSAIREKVVGFNKGCLCSIIYIDELVLHHLHLMERTDPQGAPGDVENDNGITGPTMPTSQAEAELDDWSPVTSSHLESSVRKAAASTSRLLFLTVEYVEEASSDYGNSAFSSFEPVAPFSPQPSSSLSEFEHRVSPLDPNMSSAARYSPVYAITGTGTSALAVVTGEASSAAGTGTSSNPSSPFPSSQVVSPVINSSPANALPPSPSSGNPYIDTTQVHTTTVGHGYVNPTSPLQILSDNRTSTGEGLLRQVVSGTSYFRAAAAASSTSGGILGTSPPHSPLQPPLTPTDNYVVSSSTGPLVDSMSATPSNFHGNDDVTVAVAVTTPPGRVDSTSELMIQQNTGQLVGGAPDGSQQYHGMSGGLKTESGRVQLLISSSDGSSITYSSDPGQAYYVEQLDNVLDTFKSQGLVIEEGDLRVRHHSVVRGGATLPLDISLNVTAEQQQDLIDAELLESQVNGGIESQVRRLEHPLLGEDVDMNLGVAASGLKAPAPDNFVNVLLNGHAETIVKKDNSMLPRRSKRHQIQARSPQQEIIADFKDDTKSFSEDIWINGDIKRCEECHNSYEHGCPRHRVQTICDKPVPSRAWATLPASYLAINKVGTTSDGSPVYGVFARKRIPKRTQFGPIEGVLVKADEPHVILAGGEEPQLELLVESETGAMLKLDIESENSSNWMRFVQGAESFKDQNLILSQRSFFIFTTTRVIHPRQELQVWYSLPYANKRGLPLLQPDPGKRVVEDLEHMWPCFECNERFVSSEELQKHLNVHDNEREEDGEPLKSKSKKSGRTFRRKGVSHFTPKKFKSDGDKRTELYPYQCHVCHRAFPRNYSLKRHQLLHVGEKKYICEICGHQFSHVHNRDRHVRKHHKNYGSDNSGKFTSNTVLKKKPPGPGNEWLCSHCSLTFTSASVLNLHTLAHAADNLEETEIITGLPSDFYSVYHAGEFLVQNGDVQCPQCTQEFPSKKELIDHVSAHGKPTAPQLRSRLRSVNPAKPWKCDLCYKSFAAEDRLQHHMLVHGAEESKPLQCDICYKRFLNNSALACHIKIHTEKKIYECPICKAVFDQVLALKEHTHIHSENGLFTCLQCSKVFDEYSLIRKHIRAFHSDRKHTCSYCSKPFPTLDKLRMHMLRHSDHREFLCANCGKQFKRKDKLKEHMKRMHSAERELRLSMKPYHTPTAKKFMPKVSPTDYHRFIYKCHTCLLGFKRRGMLVNHLAKRHPDISPDSVPELNLPILKTTRDYYCQYCEKIYKSSSKRKAHILKNHPGAELPMSNRRKGGVPEIPGIPNPTFSQTVGSVTTHPHGCPWCHKQYASKAKLLQHQRKKHIDLLPQNQQSPRVMKNPNSPGGPEGGKFLPMSVASRLPTCEAQQVVQLQDTADSVVTSQTIGIIPADYQITGTEEALQDYEESGIIIDTSILKRPLKNLADGVSEEILKRAMTELSQISEFHVSVSGGTASGLTGQDHFFKIVQTSSNPITVTQSQESEIHPDTSTPQSAPGRNCQDPMSPATASAPTTTSQLQHLLTSDQSYSLPSSPAATASPSSSSPGPRAWTHAHATYTPYTAR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00370429;
90% Identity: -
80% Identity: -