Cfor002253.1
Basic Information
- Insect
- Coptotermes formosanus
- Gene Symbol
- -
- Assembly
- GCA_013340265.1
- Location
- BLKM01010615.1:549442-566254[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 3.7 1.8e+02 2.4 0.4 3 12 499 508 498 517 0.82 2 16 1.6 80 3.5 5.2 1 19 525 543 525 547 0.92 3 16 0.0055 0.27 11.3 0.6 2 19 564 581 563 583 0.92 4 16 0.00015 0.0075 16.2 2.0 1 23 590 612 590 612 0.97 5 16 5.1e-06 0.00025 20.8 0.5 2 23 619 641 618 641 0.95 6 16 0.00027 0.013 15.4 2.7 1 23 647 669 647 669 0.97 7 16 0.00049 0.024 14.6 0.1 1 23 675 697 675 697 0.98 8 16 7.3e-06 0.00035 20.3 3.2 1 23 703 725 703 725 0.97 9 16 3.6 1.8e+02 2.4 0.3 1 23 735 759 735 759 0.90 10 16 4.3e-07 2.1e-05 24.2 0.5 1 23 777 799 777 799 0.98 11 16 6.6e-05 0.0032 17.3 1.9 3 23 807 827 805 827 0.98 12 16 2.1e-06 0.0001 22.1 2.3 1 23 833 855 833 855 0.98 13 16 0.1 5.1 7.3 0.6 1 23 861 883 861 883 0.96 14 16 2.8e-05 0.0013 18.5 2.3 1 20 889 908 889 911 0.94 15 16 5.3e-08 2.5e-06 27.1 0.2 1 23 917 939 917 939 0.98 16 16 7.3e-05 0.0035 17.2 3.9 1 23 945 967 945 967 0.95
Sequence Information
- Coding Sequence
- ATGAAGATAGTATTAAAAAATGTGAGTGGCGAGAGCATCACAATTGATGTCAAGCCAGAAGATACTTTTCATGACttaaagacaaaaatccatAATGAATCTGGCATTCAACTGGATCTTGaacaactgaattttaaagGGAAGAAGATAACAGATGACCAGATtgttgcagaatatttttttgatGATATAAGCATTGGGGAAGAAACTGGGCTAAAAGAGGGCACCAGCGCTGTTCAGCCATTGCAGTGTGCTGTACCTGGGTGCAATAATATTGGAGCATCATGTCCTAATAAAGTGTTCTTCAATTTTCCAGCTTCTGAGGACAGGTGCCGGCATTGGCTGTTGGTTTGTAGACGTCTTGATCTGTTGGACCAGCCACATGCCATAGTGAGTCAGcagtattttgtatgttctgaTCATTTCATAGACAGTCAGTTTGTTGATGATTCTAAACAAAGGCTGAGTCGGGGAGCTGTCCCAACGTTATTCGAGTTTAATGATCAAAATGCTGTACCAGTGGAAATAATAGATGGTGATGAGATCATTGTAGAAgAAAATTGTGAAGTAGTCATCAAACAAGAAGCGGAAAGGCGACTGGTTGACGGTGATTGTGAGAGTGATATTGAAGAGGTGGATGAAGAATTGTTATTAGAACATCCAGGCCAACTGTGTCGACTGTGCGCATCTGCTGTCAGCGAAGCGGTGTACATTTTTGGTGCCACCGGTAAAGAGCAGCACATTGCTGAGAAAATTAACACGTGTTTACCAGTGACGGTGAGAAGCACAGATCCGTTACCAAAACAACTGTGTACAGCTTGCATAAACAAGCTAAACATGTGTCATGAATTTGCTGAATCCTGCATTCAGGCAGAAAATAAACTCCTTGACTTGaatgaaaagaaacatttcagGTCACATGTTATGTGTAATATGGCAGACAGCAAAGCAAATGTTGCTATTATAGCTATGAAGCCTGAAAGTGAGCTTCAAAATGCTGGTAAATGTCAACTGAAGGGTATCAAAAGCAGCTTTATCAATGGAAGTGTGACATACTGCACAGGAACGAAACAGAGTTCATCCATTAATGGTATTCAGGAACCTGTTTGTATAGAAGATATTTGCAGAGGAAAAAGTGCTTATTTCTGTCCGCTTTGTTGTGATGGCAGCATGTCAGTTCAAAATGATGCACCTGACAGtagtttaaattataatttgtcATTATTAAAGGAGATTGGagcaaaaatatataagaaaaacaATTTGCAGCACTCGGAAGGATTTCTTACTAGTAATGACATTGCAGTATCAAATTATTTACTTGATGTAGGCAATGATGACAGTAGTAATACATGGAGTGAGGATCAAACATTGGAAAATGTTAATTTGGGAAGTATTCCAGAAGAAGACGACAAAATTGCaggggaaaataaattacatgataTGGTAGGTGGAACTGTAACCTCATTGAACCCAAAAAAGGAATTCCCCAGTTGCCGTCTTTGTGGCGAGACATTTGAAAACATAGAGCTTTGTCTGAATCATGCGAAATGTCATATGGAGTCAGATCTTTACCCATGTAGCCTCTGTGAGTTGTGTTTCACAAATGAAATGTGCCTGTTAAGTCACTGTGAAGAGCACAAGGCAGAAGAAGAAAGGCTCTTACGACCCAAAGGCTCCAAACGCCTGGTGTGCCCCACGTGTGGAAGAAGATTCAACAGTTCCAGAACACTGGCTGGCCATAACTGTTTCAGTGGAACTCGACCCTTCAAGTGTTCAGAATGTGGTAAATTTTTCCGTACAAAGGCCAGACTTGAATTTCATCAGCAAGTCCATGAAGGTGGCAGTCCTGTGGTTTGTGAGCACTGTGGTAAGGAGTTCAGTCGAGAGAACAATCTTTTTGATCATGTGCGTTTGGTACACATGGGTGAGAAATCACATCACTGTGAACAGTGTGGGAAGTCATTCCAGCTCAAGGCCCGCCTCATTGCCCATCAGCGTGTACATACTGGTGAGCGTCcgtttgtttgtgatgtttgtggGGGAAAGTTCTATGACAATGCAACACTTAAAGGCCATCGAATAACTCACATGGATGTGAAACCGTTCCAGTGCGACAAATGTGGTCGTTGTTTTGCTCGCAAGACATTGTTTAAGCAACATATTTTGGCACATGTGGATGAGTGCAAGCAGCCCAAAATGTATAACTGCAAGTTATGCACAGATGTTGCCTTCCCCACTTATGCCAAACTTGTTGAGCATAGGAAGGATTCGCATCCGTTAGTTAAAGCTTTTGAAGATGACATAACTCCACACAATACAAAACCATTTAAGTGTGATGACTGTGGAAAGTCTTTTGCATATCGGGTAACTTTAATTGCTCATCGTAGGAATCATACTGGAGAATTACCTTTTGGTTGTGAGTTCTGTGAAAAAAGATTCTCTCAGAAACGTTCCTTAGTGTTGCATCGTCGTACTCACACAGGAGAAAAACCATTCAGCTGTAACATGTGTGGTAAGCGCTTTGTTCAGAGTGCCCACCTCTACTCTCACCTCCGTCTACATACTGGTGAGAAACCATACCAGTGTGAGGTGTGCGGTGATCGTTTCAGACTGAAGGATGTACGTGACTCACATCTTCGCAAACACACTGGTGAACGCCCATTCAAATGCAATGTATGTGGGAAAGCGTTCAGGACCAGCCACTCATACTATCAGCACATGTGGATCCACCAAGGTAAAAAACCATATCCCTGTGAATACTGTGGAAAAGCATTTCGTAGGTCAAATGGGCTTAAAATTCATATCCGAATCCATACAGGTGAAAAACCACATGCCTGTGATATATGTGGTAGGTGCTTTGCACAAAAGCAAGAtatgaagaaacacagaaatttgcATATTGTTGGAAAACTGTAA
- Protein Sequence
- MKIVLKNVSGESITIDVKPEDTFHDLKTKIHNESGIQLDLEQLNFKGKKITDDQIVAEYFFDDISIGEETGLKEGTSAVQPLQCAVPGCNNIGASCPNKVFFNFPASEDRCRHWLLVCRRLDLLDQPHAIVSQQYFVCSDHFIDSQFVDDSKQRLSRGAVPTLFEFNDQNAVPVEIIDGDEIIVEENCEVVIKQEAERRLVDGDCESDIEEVDEELLLEHPGQLCRLCASAVSEAVYIFGATGKEQHIAEKINTCLPVTVRSTDPLPKQLCTACINKLNMCHEFAESCIQAENKLLDLNEKKHFRSHVMCNMADSKANVAIIAMKPESELQNAGKCQLKGIKSSFINGSVTYCTGTKQSSSINGIQEPVCIEDICRGKSAYFCPLCCDGSMSVQNDAPDSSLNYNLSLLKEIGAKIYKKNNLQHSEGFLTSNDIAVSNYLLDVGNDDSSNTWSEDQTLENVNLGSIPEEDDKIAGENKLHDMVGGTVTSLNPKKEFPSCRLCGETFENIELCLNHAKCHMESDLYPCSLCELCFTNEMCLLSHCEEHKAEEERLLRPKGSKRLVCPTCGRRFNSSRTLAGHNCFSGTRPFKCSECGKFFRTKARLEFHQQVHEGGSPVVCEHCGKEFSRENNLFDHVRLVHMGEKSHHCEQCGKSFQLKARLIAHQRVHTGERPFVCDVCGGKFYDNATLKGHRITHMDVKPFQCDKCGRCFARKTLFKQHILAHVDECKQPKMYNCKLCTDVAFPTYAKLVEHRKDSHPLVKAFEDDITPHNTKPFKCDDCGKSFAYRVTLIAHRRNHTGELPFGCEFCEKRFSQKRSLVLHRRTHTGEKPFSCNMCGKRFVQSAHLYSHLRLHTGEKPYQCEVCGDRFRLKDVRDSHLRKHTGERPFKCNVCGKAFRTSHSYYQHMWIHQGKKPYPCEYCGKAFRRSNGLKIHIRIHTGEKPHACDICGRCFAQKQDMKKHRNLHIVGKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00370263; iTF_01567023; iTF_01567211; iTF_01289265; iTF_01289028; iTF_00396349; iTF_00396591;
- 90% Identity
- iTF_00370263;
- 80% Identity
- iTF_00370263;