Basic Information

Insect: Cryptotermes secundus
Gene Symbol: -
Assembly: GCA_002891405.2
Location: NW:9-12621[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 5.2 1.5e+02 2.7 0.2 3 12 505 514 504 522 0.87

2 15 8.9 2.5e+02 1.9 5.0 1 19 531 549 531 553 0.90

3 15 0.042 1.2 9.2 0.7 2 19 569 586 568 588 0.92

4 15 0.0023 0.066 13.2 1.1 1 23 595 617 595 617 0.97

5 15 8.7e-06 0.00025 20.8 0.5 2 23 624 646 623 646 0.95

6 15 0.00011 0.0033 17.3 1.2 1 23 652 674 652 674 0.98

7 15 0.00078 0.022 14.7 0.2 1 23 680 702 680 702 0.97

8 15 2.8e-05 0.00079 19.3 3.3 1 23 708 730 708 730 0.97

9 15 9.5e-05 0.0027 17.6 1.8 1 23 782 804 782 804 0.95

10 15 0.00011 0.0032 17.3 1.9 3 23 812 832 810 832 0.98

11 15 1.7e-05 0.0005 19.9 0.9 3 23 840 860 838 860 0.98

12 15 0.11 3 8.0 0.3 1 23 866 888 866 888 0.97

13 15 0.0023 0.066 13.2 2.2 1 20 894 913 894 916 0.94

14 15 9e-08 2.6e-06 27.1 0.2 1 23 922 944 922 944 0.98

15 15 0.00012 0.0035 17.2 3.9 1 23 950 972 950 972 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	5.2	1.5e+02	2.7	0.2	3	12	505	514	504	522	0.87
2	15	8.9	2.5e+02	1.9	5.0	1	19	531	549	531	553	0.90
3	15	0.042	1.2	9.2	0.7	2	19	569	586	568	588	0.92
4	15	0.0023	0.066	13.2	1.1	1	23	595	617	595	617	0.97
5	15	8.7e-06	0.00025	20.8	0.5	2	23	624	646	623	646	0.95
6	15	0.00011	0.0033	17.3	1.2	1	23	652	674	652	674	0.98
7	15	0.00078	0.022	14.7	0.2	1	23	680	702	680	702	0.97
8	15	2.8e-05	0.00079	19.3	3.3	1	23	708	730	708	730	0.97
9	15	9.5e-05	0.0027	17.6	1.8	1	23	782	804	782	804	0.95
10	15	0.00011	0.0032	17.3	1.9	3	23	812	832	810	832	0.98
11	15	1.7e-05	0.0005	19.9	0.9	3	23	840	860	838	860	0.98
12	15	0.11	3	8.0	0.3	1	23	866	888	866	888	0.97
13	15	0.0023	0.066	13.2	2.2	1	20	894	913	894	916	0.94
14	15	9e-08	2.6e-06	27.1	0.2	1	23	922	944	922	944	0.98
15	15	0.00012	0.0035	17.2	3.9	1	23	950	972	950	972	0.95

Sequence Information

Coding Sequence: ATGGCATTCAGATCAACTGGAACCCCCCTGAGCATGAAGATAGTGTTAAAAAACGTAAGTGGTGAGAGCATCACAATTGATGTAAAGCCTGAAGATACTTTCCGTGACCTAAAGTCAAGAATACAGAATGAATCTGGCGTTCAGCTTGATCTAGAAcaactgaattttaaaggaAAGAAGATAACGGATGATCAGATTGTTGCAGAATATTTCTTTGATGATATTGGTGCTGGTGAAGAAAGTGGGCCAAAACAAGAAGTCGCTGATAATGTTCAGTCACTGGCATGTGCCGTGCCTGGGTGCCATAACAGTAAATCTTCGTGTCCTGATAAATACTTCTTCCATTTTCCAGTTTCTGAAGACAGGTGCCGGCATTGGCTGTTGGTTTGTAGACGTCTTGATCTACTGGATAAGCCATGTGCCTTAGTGAGTCAGCATAATGTTGTATGTTCTGATCATTTCATAGCCAGTCAGTTTGCTGATAATTCTAAACAAAGACTGAAGAAAGGAGCTATTCCAACTTTGCTTGACTTCAGCAGTCCGAATGTTCCAGTGGAAATAATGGATGGTGATCAAATCATTGTAGAAGAGAACTGTGAAATAGTCATCAAACAGGAGCAAGGAGCAAAGCCACATGTTGAACTTGATTATGACAGTGACCTTGGAGACGTGGATGAAGAATTGGTATCAGAACATCCGGGCCAACTCTGCAGACTCTGCGCATCTGCTGTTAATGAAGTGGTTTACATTTTTAGTGGTACTGGGAAAAAACAGCACATTGCTGAGAAAATTAATATGTGTTTACCTGTGACGGTTAAATGTACAGATCCTCTGCCAAAACAGCTGTGTGCACCTTGCATCAACAAGTTAAACATGTGTCATGAATTTGCAGAATCTTGCATTCAGGCAGAAAATAAACTCCTTGAATTGAATGAAAGGAAGCATTTCAGGTCACATGCTGTATATGATATGGAAGACAATAAAGCAAATGTTGCTATTATTGCCATCAAATCTGAACATGAGCCTGAAAATGCTGGTATAGAAAGCAGTTTTATCAATGGAAGTGTGACATATTGTACAGGAACAAAACAGGGTTCAACCATTAATGGTGTCCAGGAATCTAACAATATAGAAGAAATCTGTGGAGGAAACCGTGCTTATTTCTGTCCTCTTTGCTGTGATGGCAATATGTCCATTAGAAGTGATGCACCCGAAGGCAGTGAAAATTATGATTTGGCATTATTAAAGGAAATTGGagcaaaaatatataagaagaaTAATGTGCATCACTCAGAAGAATTTCATGATGGTCATGAAGTAGTGATGCAGAATAATTTACTTGCTGAAACCAGTGAGGATAGTAATACTGTATGGGGTGATGATGGTCCAGTGGAAAGTGTTAATTTGAGAAGTATATCTCAAGAAGACAGCAAAATTGTAGGGGACGATAAACTATATAATATGGTAGATGGCACTGTAAACTTACTGTACCCAAAAGTAGAGTTTCCCAGCTGTCGTCTTTGTGGAGAGACATTTGCGAACATAGAGCTCTGTCTGGATCATGCCAAGTGTCACATGGAGTCAGATCTTTATCCTTGTAGCCTATGTGAATTGTGTTTCACAAGTGAATTGTGCCTAGTAAGTCACTGTGAGGAGCACAAGGCAGAAGAAAGGCGATTACGACCTAAAGGCTCAAAGCGCCTGGTATGTGCCACGTGTGGGAGAAGGTTCAACAATTCCAAAACTTTGGCTGGCCATAACTGTTTCAGTGCAACACGACCTTTCAAGTGTTTAGAATGTGGTAAATTTTTCCGTACTGAGGCCAGACTTGAATTTCATCAGCAGATCCATGAAGGTGGCAGTCCTGTGGTGTGTGAGCACTGTGGCAAGGAATTCAGCCGAGAAAACAACCTTTTTGATCATGTGCGTTTGGTGCACATGGGTGAGAAAGCACATCGGTGTGAACAGTGTGGGAAGTCATTCCAGCTGAAGGCTCGTCTTGTTGCCCATCAGCGTGTACATACTGGTGAACGTCCCTTTGTTTGCAATATTTGTGGAGGGAAATTCTATGACAATGCAACACTTAAGGGCCATCGAGTCACTCACATGGATGTGAAACCTTTTCAGTGTGACAAATGTGGCCGTTGTTTTGCCCGGAAAACTTTGTTTAAGCAACATGTTATGGCTCATGTGGATGAGTACAAGCAGCCCAGAATGTATAACTGCAAGTTGTGCATTGATAGTATCTTCCCTACATATGCCAAACTTGTTGAACATAGGAAGGATTCACATCCTTCAGTTAAATCCTTTGAGGATGATGTAACTCCACATAACACAAAACCATTTAAATGTGAGGACTGTGGAAAGTCATTTGCATATCGGGTGACTTTAGTAGCACATTGTAGGAATCATACTGGAGAGTTGCCATTTGGTTGTGAGTTCTGTGAAAAAAGATTTTCTCAGAAACGTTCCTTAGTGTTGCATCGTCGTACACATACAGGAGAGAAACCATTTGGCTGTGATGTATGTGGTAAACGGTTTGTTCAGAGTGCCCACCTGTACTCTCATCTTCGTCTACACACGGGTGAAAAACCATACCAGTGTGAAGTATGTGGTGATCGTTTCAGACTCAAGGATGTGCGTGATGCACATCTTCGCAAACACACTGGCGAACGCCCATTCAAATGCAGTGTATGTGCAAAAGCATTTAGAACTAGTCATTCTTATTATCAACACATGTGGATCCACCAAGGCAAGAAACCATACCCTTGTGAATATTGTGGAAAAGCATTTCGTCGATCAAATGGACTTAAAATTCATATCCGAATTCATACAGGTGAAAAACCACATGCCTGTGATATATGTGGTCGCTGCTTCGCACAGAAGCAGGATATGAAAAAACATAGAAATTTGCATGTTGCAGGCAAATTGTAA
Protein Sequence: MAFRSTGTPLSMKIVLKNVSGESITIDVKPEDTFRDLKSRIQNESGVQLDLEQLNFKGKKITDDQIVAEYFFDDIGAGEESGPKQEVADNVQSLACAVPGCHNSKSSCPDKYFFHFPVSEDRCRHWLLVCRRLDLLDKPCALVSQHNVVCSDHFIASQFADNSKQRLKKGAIPTLLDFSSPNVPVEIMDGDQIIVEENCEIVIKQEQGAKPHVELDYDSDLGDVDEELVSEHPGQLCRLCASAVNEVVYIFSGTGKKQHIAEKINMCLPVTVKCTDPLPKQLCAPCINKLNMCHEFAESCIQAENKLLELNERKHFRSHAVYDMEDNKANVAIIAIKSEHEPENAGIESSFINGSVTYCTGTKQGSTINGVQESNNIEEICGGNRAYFCPLCCDGNMSIRSDAPEGSENYDLALLKEIGAKIYKKNNVHHSEEFHDGHEVVMQNNLLAETSEDSNTVWGDDGPVESVNLRSISQEDSKIVGDDKLYNMVDGTVNLLYPKVEFPSCRLCGETFANIELCLDHAKCHMESDLYPCSLCELCFTSELCLVSHCEEHKAEERRLRPKGSKRLVCATCGRRFNNSKTLAGHNCFSATRPFKCLECGKFFRTEARLEFHQQIHEGGSPVVCEHCGKEFSRENNLFDHVRLVHMGEKAHRCEQCGKSFQLKARLVAHQRVHTGERPFVCNICGGKFYDNATLKGHRVTHMDVKPFQCDKCGRCFARKTLFKQHVMAHVDEYKQPRMYNCKLCIDSIFPTYAKLVEHRKDSHPSVKSFEDDVTPHNTKPFKCEDCGKSFAYRVTLVAHCRNHTGELPFGCEFCEKRFSQKRSLVLHRRTHTGEKPFGCDVCGKRFVQSAHLYSHLRLHTGEKPYQCEVCGDRFRLKDVRDAHLRKHTGERPFKCSVCAKAFRTSHSYYQHMWIHQGKKPYPCEYCGKAFRRSNGLKIHIRIHTGEKPHACDICGRCFAQKQDMKKHRNLHVAGKL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00370391;
90% Identity: iTF_00396349;
80% Identity: iTF_00396349;